Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2163 and HP15_2164 overlap by 1 nucleotides HP15_2164 and HP15_2165 are separated by 334 nucleotides
HP15_2163: HP15_2163 - sugar ABC transporter, ATP-binding protein, at 2,269,438 to 2,270,538
_2163
HP15_2164: HP15_2164 - ATP-binding protein of sugar ABC transporter, at 2,270,538 to 2,271,632
_2164
HP15_2165: HP15_2165 - sigma-54 dependent transcriptional regulator, at 2,271,967 to 2,273,847
_2165
Position (kb)
2270
2271
2272 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2269.573 kb on - strand, within HP15_2163 at 2269.612 kb on + strand, within HP15_2163 at 2269.846 kb on - strand, within HP15_2163 at 2269.856 kb on - strand, within HP15_2163 at 2269.902 kb on + strand, within HP15_2163 at 2269.928 kb on + strand, within HP15_2163 at 2269.929 kb on - strand, within HP15_2163 at 2270.012 kb on - strand, within HP15_2163 at 2270.041 kb on - strand, within HP15_2163 at 2270.064 kb on + strand, within HP15_2163 at 2270.366 kb on - strand, within HP15_2163 at 2270.404 kb on + strand, within HP15_2163 at 2270.412 kb on - strand, within HP15_2163 at 2270.490 kb on + strand at 2270.649 kb on + strand, within HP15_2164 at 2270.722 kb on + strand, within HP15_2164 at 2270.736 kb on + strand, within HP15_2164 at 2270.955 kb on + strand, within HP15_2164 at 2271.072 kb on + strand, within HP15_2164 at 2271.074 kb on + strand, within HP15_2164 at 2271.082 kb on - strand, within HP15_2164 at 2271.084 kb on - strand, within HP15_2164 at 2271.115 kb on + strand, within HP15_2164 at 2271.201 kb on + strand, within HP15_2164 at 2271.209 kb on - strand, within HP15_2164 at 2271.216 kb on - strand, within HP15_2164 at 2271.218 kb on + strand, within HP15_2164 at 2271.234 kb on - strand, within HP15_2164 at 2271.260 kb on - strand, within HP15_2164 at 2271.362 kb on + strand, within HP15_2164 at 2271.484 kb on - strand, within HP15_2164 at 2271.484 kb on - strand, within HP15_2164 at 2271.521 kb on + strand, within HP15_2164 at 2271.620 kb on + strand at 2271.628 kb on - strand at 2271.674 kb on + strand at 2271.896 kb on + strand at 2272.093 kb on - strand at 2272.127 kb on - strand at 2272.175 kb on + strand, within HP15_2165 at 2272.243 kb on + strand, within HP15_2165 at 2272.251 kb on - strand, within HP15_2165 at 2272.389 kb on + strand, within HP15_2165 at 2272.468 kb on - strand, within HP15_2165 at 2272.506 kb on + strand, within HP15_2165 at 2272.514 kb on - strand, within HP15_2165
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 2,269,573 - HP15_2163 0.12 +1.2 2,269,612 + HP15_2163 0.16 -0.8 2,269,846 - HP15_2163 0.37 +1.5 2,269,856 - HP15_2163 0.38 -0.6 2,269,902 + HP15_2163 0.42 +0.5 2,269,928 + HP15_2163 0.45 +0.3 2,269,929 - HP15_2163 0.45 -0.3 2,270,012 - HP15_2163 0.52 +0.0 2,270,041 - HP15_2163 0.55 -0.5 2,270,064 + HP15_2163 0.57 -0.4 2,270,366 - HP15_2163 0.84 +1.8 2,270,404 + HP15_2163 0.88 +1.5 2,270,412 - HP15_2163 0.88 -0.1 2,270,490 + -0.2 2,270,649 + HP15_2164 0.10 -0.7 2,270,722 + HP15_2164 0.17 -0.5 2,270,736 + HP15_2164 0.18 -0.1 2,270,955 + HP15_2164 0.38 -1.5 2,271,072 + HP15_2164 0.49 -1.6 2,271,074 + HP15_2164 0.49 -0.8 2,271,082 - HP15_2164 0.50 +0.2 2,271,084 - HP15_2164 0.50 +0.7 2,271,115 + HP15_2164 0.53 -0.5 2,271,201 + HP15_2164 0.61 -0.7 2,271,209 - HP15_2164 0.61 +2.5 2,271,216 - HP15_2164 0.62 +0.8 2,271,218 + HP15_2164 0.62 -0.4 2,271,234 - HP15_2164 0.64 +1.2 2,271,260 - HP15_2164 0.66 -0.4 2,271,362 + HP15_2164 0.75 +1.5 2,271,484 - HP15_2164 0.86 -2.2 2,271,484 - HP15_2164 0.86 +1.2 2,271,521 + HP15_2164 0.90 +0.2 2,271,620 + +1.5 2,271,628 - +1.0 2,271,674 + -0.2 2,271,896 + +1.4 2,272,093 - +0.5 2,272,127 - -0.4 2,272,175 + HP15_2165 0.11 +1.7 2,272,243 + HP15_2165 0.15 +0.6 2,272,251 - HP15_2165 0.15 +2.9 2,272,389 + HP15_2165 0.22 +1.6 2,272,468 - HP15_2165 0.27 +0.3 2,272,506 + HP15_2165 0.29 +0.2 2,272,514 - HP15_2165 0.29 +0.9
Or see this region's nucleotide sequence