Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2154 and HP15_2155 are separated by 11 nucleotides HP15_2155 and HP15_2156 are separated by 22 nucleotides
HP15_2154: HP15_2154 - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, at 2,259,347 to 2,260,978
_2154
HP15_2155: HP15_2155 - triosephosphate isomerase, at 2,260,990 to 2,261,796
_2155
HP15_2156: HP15_2156 - phosphopyruvate hydratase, at 2,261,819 to 2,263,060
_2156
Position (kb)
2260
2261
2262 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2260.011 kb on + strand, within HP15_2154 at 2260.228 kb on + strand, within HP15_2154 at 2260.247 kb on - strand, within HP15_2154 at 2260.247 kb on - strand, within HP15_2154 at 2260.417 kb on + strand, within HP15_2154 at 2260.420 kb on - strand, within HP15_2154 at 2260.425 kb on - strand, within HP15_2154 at 2260.437 kb on - strand, within HP15_2154 at 2260.531 kb on + strand, within HP15_2154 at 2260.649 kb on - strand, within HP15_2154 at 2260.673 kb on + strand, within HP15_2154 at 2260.698 kb on + strand, within HP15_2154 at 2260.718 kb on - strand, within HP15_2154 at 2260.718 kb on - strand, within HP15_2154 at 2260.760 kb on + strand, within HP15_2154 at 2260.805 kb on + strand, within HP15_2154 at 2260.813 kb on - strand, within HP15_2154 at 2260.851 kb on - strand at 2260.861 kb on - strand at 2260.895 kb on + strand at 2261.111 kb on + strand, within HP15_2155 at 2261.113 kb on + strand, within HP15_2155 at 2261.121 kb on + strand, within HP15_2155 at 2261.147 kb on - strand, within HP15_2155 at 2261.147 kb on - strand, within HP15_2155 at 2261.403 kb on - strand, within HP15_2155 at 2261.435 kb on - strand, within HP15_2155 at 2261.473 kb on - strand, within HP15_2155 at 2261.520 kb on - strand, within HP15_2155 at 2261.591 kb on - strand, within HP15_2155 at 2261.663 kb on - strand, within HP15_2155 at 2261.909 kb on - strand at 2261.920 kb on + strand at 2262.061 kb on + strand, within HP15_2156 at 2262.069 kb on - strand, within HP15_2156 at 2262.096 kb on + strand, within HP15_2156 at 2262.251 kb on - strand, within HP15_2156 at 2262.539 kb on + strand, within HP15_2156 at 2262.564 kb on + strand, within HP15_2156 at 2262.582 kb on + strand, within HP15_2156 at 2262.715 kb on + strand, within HP15_2156
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 2,260,011 + HP15_2154 0.41 -0.3 2,260,228 + HP15_2154 0.54 -0.4 2,260,247 - HP15_2154 0.55 -1.4 2,260,247 - HP15_2154 0.55 +0.2 2,260,417 + HP15_2154 0.66 -1.5 2,260,420 - HP15_2154 0.66 +0.0 2,260,425 - HP15_2154 0.66 -0.0 2,260,437 - HP15_2154 0.67 -0.2 2,260,531 + HP15_2154 0.73 +0.8 2,260,649 - HP15_2154 0.80 +1.8 2,260,673 + HP15_2154 0.81 -0.0 2,260,698 + HP15_2154 0.83 +0.6 2,260,718 - HP15_2154 0.84 +1.3 2,260,718 - HP15_2154 0.84 -1.0 2,260,760 + HP15_2154 0.87 +0.2 2,260,805 + HP15_2154 0.89 +1.3 2,260,813 - HP15_2154 0.90 +0.3 2,260,851 - +0.7 2,260,861 - +0.4 2,260,895 + +1.4 2,261,111 + HP15_2155 0.15 +0.9 2,261,113 + HP15_2155 0.15 +0.8 2,261,121 + HP15_2155 0.16 -0.4 2,261,147 - HP15_2155 0.19 +1.9 2,261,147 - HP15_2155 0.19 +0.4 2,261,403 - HP15_2155 0.51 -0.4 2,261,435 - HP15_2155 0.55 +0.0 2,261,473 - HP15_2155 0.60 -0.2 2,261,520 - HP15_2155 0.66 -0.7 2,261,591 - HP15_2155 0.74 -0.3 2,261,663 - HP15_2155 0.83 +1.7 2,261,909 - +1.9 2,261,920 + -0.3 2,262,061 + HP15_2156 0.19 +1.2 2,262,069 - HP15_2156 0.20 +0.4 2,262,096 + HP15_2156 0.22 -0.3 2,262,251 - HP15_2156 0.35 -0.2 2,262,539 + HP15_2156 0.58 +0.1 2,262,564 + HP15_2156 0.60 -3.5 2,262,582 + HP15_2156 0.61 +1.0 2,262,715 + HP15_2156 0.72 -0.5
Or see this region's nucleotide sequence