Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1914 and HP15_1915 are separated by 2 nucleotides HP15_1915 and HP15_1916 overlap by 4 nucleotides
HP15_1914: HP15_1914 - asparagine synthase, glutamine-hydrolyzing, at 2,027,916 to 2,029,814
_1914
HP15_1915: HP15_1915 - glycosyl transferase, group 1, at 2,029,817 to 2,030,968
_1915
HP15_1916: HP15_1916 - O-antigen polymerase, at 2,030,965 to 2,032,335
_1916
Position (kb)
2029
2030
2031 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 2028.968 kb on - strand, within HP15_1914 at 2028.987 kb on + strand, within HP15_1914 at 2029.109 kb on + strand, within HP15_1914 at 2029.121 kb on + strand, within HP15_1914 at 2029.121 kb on + strand, within HP15_1914 at 2029.129 kb on - strand, within HP15_1914 at 2029.233 kb on - strand, within HP15_1914 at 2029.444 kb on + strand, within HP15_1914 at 2029.661 kb on - strand at 2029.688 kb on - strand at 2029.728 kb on + strand at 2029.747 kb on + strand at 2029.964 kb on - strand, within HP15_1915 at 2030.029 kb on - strand, within HP15_1915 at 2030.228 kb on - strand, within HP15_1915 at 2030.271 kb on + strand, within HP15_1915 at 2030.285 kb on + strand, within HP15_1915 at 2030.300 kb on - strand, within HP15_1915 at 2030.530 kb on - strand, within HP15_1915 at 2030.531 kb on + strand, within HP15_1915 at 2030.562 kb on + strand, within HP15_1915 at 2030.587 kb on + strand, within HP15_1915 at 2030.612 kb on + strand, within HP15_1915 at 2030.698 kb on - strand at 2030.714 kb on + strand, within HP15_1915 at 2030.812 kb on - strand, within HP15_1915 at 2030.832 kb on - strand, within HP15_1915 at 2030.917 kb on - strand at 2031.237 kb on - strand, within HP15_1916 at 2031.324 kb on + strand, within HP15_1916 at 2031.327 kb on - strand, within HP15_1916 at 2031.418 kb on + strand, within HP15_1916 at 2031.438 kb on + strand, within HP15_1916 at 2031.600 kb on - strand, within HP15_1916 at 2031.607 kb on - strand, within HP15_1916 at 2031.607 kb on - strand, within HP15_1916 at 2031.698 kb on - strand, within HP15_1916 at 2031.698 kb on - strand, within HP15_1916 at 2031.798 kb on - strand, within HP15_1916 at 2031.798 kb on - strand, within HP15_1916 at 2031.848 kb on + strand, within HP15_1916 at 2031.913 kb on + strand, within HP15_1916 at 2031.913 kb on - strand, within HP15_1916
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 2,028,968 - HP15_1914 0.55 -2.8 2,028,987 + HP15_1914 0.56 -1.1 2,029,109 + HP15_1914 0.63 -1.2 2,029,121 + HP15_1914 0.63 -2.3 2,029,121 + HP15_1914 0.63 +1.0 2,029,129 - HP15_1914 0.64 -1.0 2,029,233 - HP15_1914 0.69 -1.0 2,029,444 + HP15_1914 0.80 +0.4 2,029,661 - -6.9 2,029,688 - -1.5 2,029,728 + -1.2 2,029,747 + +0.3 2,029,964 - HP15_1915 0.13 +0.1 2,030,029 - HP15_1915 0.18 -1.4 2,030,228 - HP15_1915 0.36 -1.9 2,030,271 + HP15_1915 0.39 -0.5 2,030,285 + HP15_1915 0.41 -0.8 2,030,300 - HP15_1915 0.42 +0.1 2,030,530 - HP15_1915 0.62 -1.2 2,030,531 + HP15_1915 0.62 -0.8 2,030,562 + HP15_1915 0.65 -0.3 2,030,587 + HP15_1915 0.67 -0.3 2,030,612 + HP15_1915 0.69 -1.4 2,030,698 - +1.3 2,030,714 + HP15_1915 0.78 -2.7 2,030,812 - HP15_1915 0.86 +0.6 2,030,832 - HP15_1915 0.88 -0.9 2,030,917 - -3.1 2,031,237 - HP15_1916 0.20 -2.7 2,031,324 + HP15_1916 0.26 -1.2 2,031,327 - HP15_1916 0.26 +0.4 2,031,418 + HP15_1916 0.33 -2.0 2,031,438 + HP15_1916 0.35 +0.7 2,031,600 - HP15_1916 0.46 -1.5 2,031,607 - HP15_1916 0.47 -0.7 2,031,607 - HP15_1916 0.47 +0.2 2,031,698 - HP15_1916 0.53 +1.5 2,031,698 - HP15_1916 0.53 +0.4 2,031,798 - HP15_1916 0.61 -0.0 2,031,798 - HP15_1916 0.61 -0.1 2,031,848 + HP15_1916 0.64 -0.0 2,031,913 + HP15_1916 0.69 -0.4 2,031,913 - HP15_1916 0.69 -0.8
Or see this region's nucleotide sequence