Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1912 and HP15_1913 are separated by 7 nucleotides HP15_1913 and HP15_1914 overlap by 4 nucleotides
HP15_1912: HP15_1912 - polysaccharide biosynthesis protein, at 2,025,627 to 2,026,790
_1912
HP15_1913: HP15_1913 - glycosyltransferase, at 2,026,798 to 2,027,919
_1913
HP15_1914: HP15_1914 - asparagine synthase, glutamine-hydrolyzing, at 2,027,916 to 2,029,814
_1914
Position (kb)
2026
2027
2028 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2025.813 kb on + strand, within HP15_1912 at 2025.927 kb on + strand, within HP15_1912 at 2025.946 kb on + strand, within HP15_1912 at 2026.018 kb on + strand, within HP15_1912 at 2026.036 kb on - strand, within HP15_1912 at 2026.052 kb on + strand, within HP15_1912 at 2026.060 kb on - strand, within HP15_1912 at 2026.278 kb on - strand, within HP15_1912 at 2026.488 kb on - strand, within HP15_1912 at 2026.682 kb on + strand at 2026.687 kb on + strand at 2026.813 kb on - strand at 2026.826 kb on + strand at 2026.916 kb on - strand, within HP15_1913 at 2027.022 kb on - strand, within HP15_1913 at 2027.048 kb on + strand, within HP15_1913 at 2027.124 kb on - strand, within HP15_1913 at 2027.133 kb on - strand, within HP15_1913 at 2027.148 kb on + strand, within HP15_1913 at 2027.296 kb on - strand, within HP15_1913 at 2027.350 kb on + strand, within HP15_1913 at 2027.355 kb on + strand, within HP15_1913 at 2027.358 kb on - strand, within HP15_1913 at 2027.399 kb on - strand, within HP15_1913 at 2027.491 kb on + strand, within HP15_1913 at 2027.501 kb on - strand, within HP15_1913 at 2027.506 kb on - strand, within HP15_1913 at 2027.542 kb on - strand at 2027.617 kb on + strand, within HP15_1913 at 2027.625 kb on - strand, within HP15_1913 at 2027.652 kb on - strand, within HP15_1913 at 2027.726 kb on - strand, within HP15_1913 at 2027.856 kb on + strand at 2027.976 kb on - strand at 2028.005 kb on + strand at 2028.027 kb on + strand at 2028.225 kb on - strand, within HP15_1914 at 2028.322 kb on + strand, within HP15_1914 at 2028.587 kb on + strand, within HP15_1914 at 2028.803 kb on + strand, within HP15_1914
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 2,025,813 + HP15_1912 0.16 -0.8 2,025,927 + HP15_1912 0.26 -0.3 2,025,946 + HP15_1912 0.27 +0.1 2,026,018 + HP15_1912 0.34 -0.9 2,026,036 - HP15_1912 0.35 +2.9 2,026,052 + HP15_1912 0.37 +0.4 2,026,060 - HP15_1912 0.37 +0.7 2,026,278 - HP15_1912 0.56 -2.0 2,026,488 - HP15_1912 0.74 -1.0 2,026,682 + -1.2 2,026,687 + +0.5 2,026,813 - -0.3 2,026,826 + -0.9 2,026,916 - HP15_1913 0.11 -0.9 2,027,022 - HP15_1913 0.20 +0.9 2,027,048 + HP15_1913 0.22 -0.6 2,027,124 - HP15_1913 0.29 -0.5 2,027,133 - HP15_1913 0.30 -1.6 2,027,148 + HP15_1913 0.31 -0.9 2,027,296 - HP15_1913 0.44 +1.2 2,027,350 + HP15_1913 0.49 -0.8 2,027,355 + HP15_1913 0.50 -0.7 2,027,358 - HP15_1913 0.50 -1.9 2,027,399 - HP15_1913 0.54 +0.6 2,027,491 + HP15_1913 0.62 -0.3 2,027,501 - HP15_1913 0.63 -0.3 2,027,506 - HP15_1913 0.63 -0.5 2,027,542 - -0.1 2,027,617 + HP15_1913 0.73 -1.6 2,027,625 - HP15_1913 0.74 -1.0 2,027,652 - HP15_1913 0.76 -0.7 2,027,726 - HP15_1913 0.83 -1.9 2,027,856 + +1.0 2,027,976 - -0.4 2,028,005 + -2.2 2,028,027 + -0.1 2,028,225 - HP15_1914 0.16 +0.6 2,028,322 + HP15_1914 0.21 -0.8 2,028,587 + HP15_1914 0.35 -0.2 2,028,803 + HP15_1914 0.47 -1.0
Or see this region's nucleotide sequence