Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1907 and HP15_1908 are separated by 6 nucleotides HP15_1908 and HP15_1909 are separated by 3 nucleotides
HP15_1907: HP15_1907 - coenzyme F390 synthetase-like protein, at 2,017,789 to 2,019,153
_1907
HP15_1908: HP15_1908 - glycosyl transferase, family 2, at 2,019,160 to 2,020,089
_1908
HP15_1909: HP15_1909 - fibronectin, type III domain protein-like protein, at 2,020,093 to 2,021,283
_1909
Position (kb)
2019
2020
2021 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.340 kb on + strand, within HP15_1907 at 2018.835 kb on + strand, within HP15_1907 at 2019.058 kb on + strand at 2019.142 kb on + strand at 2019.315 kb on + strand, within HP15_1908 at 2019.364 kb on + strand, within HP15_1908 at 2019.372 kb on - strand, within HP15_1908 at 2019.489 kb on + strand, within HP15_1908 at 2019.582 kb on + strand, within HP15_1908 at 2019.582 kb on + strand, within HP15_1908 at 2019.593 kb on + strand, within HP15_1908 at 2019.685 kb on - strand, within HP15_1908 at 2019.729 kb on - strand, within HP15_1908 at 2019.827 kb on - strand, within HP15_1908 at 2019.864 kb on + strand, within HP15_1908 at 2019.907 kb on - strand, within HP15_1908 at 2019.990 kb on - strand, within HP15_1908 at 2020.117 kb on - strand at 2020.828 kb on - strand, within HP15_1909 at 2021.037 kb on + strand, within HP15_1909
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 2,018,191 + HP15_1907 0.29 -2.4 2,018,191 + HP15_1907 0.29 -4.1 2,018,191 + HP15_1907 0.29 -3.3 2,018,196 + HP15_1907 0.30 -3.9 2,018,196 + HP15_1907 0.30 -5.5 2,018,340 + HP15_1907 0.40 -4.3 2,018,835 + HP15_1907 0.77 -4.4 2,019,058 + -5.0 2,019,142 + -2.7 2,019,315 + HP15_1908 0.17 +1.1 2,019,364 + HP15_1908 0.22 -0.8 2,019,372 - HP15_1908 0.23 -1.4 2,019,489 + HP15_1908 0.35 -0.7 2,019,582 + HP15_1908 0.45 +0.6 2,019,582 + HP15_1908 0.45 -0.6 2,019,593 + HP15_1908 0.47 -0.6 2,019,685 - HP15_1908 0.56 -1.7 2,019,729 - HP15_1908 0.61 +0.4 2,019,827 - HP15_1908 0.72 -1.9 2,019,864 + HP15_1908 0.76 +0.3 2,019,907 - HP15_1908 0.80 -0.5 2,019,990 - HP15_1908 0.89 -0.2 2,020,117 - +0.3 2,020,828 - HP15_1909 0.62 -1.7 2,021,037 + HP15_1909 0.79 -0.1
Or see this region's nucleotide sequence