Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_188 and HP15_189 are separated by 15 nucleotides HP15_189 and HP15_190 are separated by 240 nucleotides HP15_190 and HP15_191 are separated by 290 nucleotides
HP15_188: HP15_188 - plasmid pTOM9 ORF1-like protein, at 178,272 to 178,925
_188
HP15_189: HP15_189 - plasmidpTOM9-like protein, at 178,941 to 179,636
_189
HP15_190: HP15_190 - protein containing methyltransferase type 12 domain, at 179,877 to 180,323
_190
HP15_191: HP15_191 - Hg(II)--responsive transcriptional regulator, at 180,614 to 181,048
_191
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 178.956 kb on + strand at 179.036 kb on + strand, within HP15_189 at 179.076 kb on - strand, within HP15_189 at 179.163 kb on + strand, within HP15_189 at 179.176 kb on - strand, within HP15_189 at 179.183 kb on + strand, within HP15_189 at 179.191 kb on - strand, within HP15_189 at 179.191 kb on - strand, within HP15_189 at 179.285 kb on + strand, within HP15_189 at 179.293 kb on - strand, within HP15_189 at 179.418 kb on + strand, within HP15_189 at 179.424 kb on - strand, within HP15_189 at 179.424 kb on - strand, within HP15_189 at 179.441 kb on + strand, within HP15_189 at 179.537 kb on - strand, within HP15_189 at 179.592 kb on - strand at 179.609 kb on - strand at 179.648 kb on - strand at 179.700 kb on - strand at 179.769 kb on + strand at 179.787 kb on - strand at 179.834 kb on - strand at 179.901 kb on + strand at 179.953 kb on + strand, within HP15_190 at 179.954 kb on - strand, within HP15_190 at 180.046 kb on - strand, within HP15_190 at 180.208 kb on - strand, within HP15_190 at 180.215 kb on + strand, within HP15_190 at 180.222 kb on - strand, within HP15_190 at 180.237 kb on + strand, within HP15_190 at 180.296 kb on + strand at 180.296 kb on + strand at 180.316 kb on - strand at 180.322 kb on + strand at 180.504 kb on - strand at 180.594 kb on - strand at 180.605 kb on + strand at 180.653 kb on + strand at 180.686 kb on - strand, within HP15_191 at 180.716 kb on + strand, within HP15_191 at 180.729 kb on - strand, within HP15_191 at 180.892 kb on - strand, within HP15_191 at 180.916 kb on + strand, within HP15_191 at 181.098 kb on - strand at 181.110 kb on + strand at 181.152 kb on + strand at 181.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 178,956 + +1.7 179,036 + HP15_189 0.14 +0.4 179,076 - HP15_189 0.19 -0.9 179,163 + HP15_189 0.32 +0.2 179,176 - HP15_189 0.34 -1.4 179,183 + HP15_189 0.35 +0.1 179,191 - HP15_189 0.36 +0.2 179,191 - HP15_189 0.36 -0.1 179,285 + HP15_189 0.49 -2.5 179,293 - HP15_189 0.51 -0.2 179,418 + HP15_189 0.69 +1.2 179,424 - HP15_189 0.69 +1.4 179,424 - HP15_189 0.69 +0.5 179,441 + HP15_189 0.72 +0.6 179,537 - HP15_189 0.86 +0.3 179,592 - -0.2 179,609 - -0.2 179,648 - +0.4 179,700 - +0.2 179,769 + +2.9 179,787 - -1.8 179,834 - -0.3 179,901 + -1.0 179,953 + HP15_190 0.17 +0.1 179,954 - HP15_190 0.17 -0.7 180,046 - HP15_190 0.38 -1.1 180,208 - HP15_190 0.74 -1.3 180,215 + HP15_190 0.76 +0.2 180,222 - HP15_190 0.77 -1.2 180,237 + HP15_190 0.81 +1.2 180,296 + -0.5 180,296 + +0.4 180,316 - +1.0 180,322 + +0.2 180,504 - -0.2 180,594 - -0.8 180,605 + +0.0 180,653 + -0.7 180,686 - HP15_191 0.17 +0.1 180,716 + HP15_191 0.23 -0.7 180,729 - HP15_191 0.26 -0.5 180,892 - HP15_191 0.64 -0.1 180,916 + HP15_191 0.69 -0.9 181,098 - -0.0 181,110 + -0.3 181,152 + -0.1 181,164 + +1.6
Or see this region's nucleotide sequence