Strain Fitness in Marinobacter adhaerens HP15 around HP15_1853

Experiment: monoculture; Experiment A, time point 7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1851 and HP15_1852 are separated by 65 nucleotidesHP15_1852 and HP15_1853 are separated by 190 nucleotidesHP15_1853 and HP15_1854 are separated by 27 nucleotides HP15_1851: HP15_1851 - para-aminobenzoate synthase, subunit I, at 1,949,950 to 1,951,341 _1851 HP15_1852: HP15_1852 - homoserine kinase, at 1,951,407 to 1,952,063 _1852 HP15_1853: HP15_1853 - phosphoadenosine phosphosulfate reductase, at 1,952,254 to 1,952,976 _1853 HP15_1854: HP15_1854 - transcriptional regulator, LysR family, at 1,953,004 to 1,953,981 _1854 Position (kb) 1952 1953Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1951.343 kb on - strandat 1951.371 kb on - strandat 1951.461 kb on + strandat 1952.116 kb on - strandat 1952.213 kb on + strandat 1952.251 kb on + strandat 1952.970 kb on + strandat 1952.978 kb on - strandat 1952.978 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
remove
1,951,343 - -1.0
1,951,371 - +0.7
1,951,461 + +0.8
1,952,116 - +0.5
1,952,213 + -6.0
1,952,251 + -2.6
1,952,970 + -0.6
1,952,978 - +0.4
1,952,978 - +0.8

Or see this region's nucleotide sequence