Strain Fitness in Marinobacter adhaerens HP15 around HP15_1831

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1830 and HP15_1831 are separated by 314 nucleotidesHP15_1831 and HP15_1832 are separated by 164 nucleotides HP15_1830: HP15_1830 - secreted protein containing motility protein FimV, at 1,926,830 to 1,930,078 _1830 HP15_1831: HP15_1831 - aspartate-semialdehyde dehydrogenase, at 1,930,393 to 1,931,475 _1831 HP15_1832: HP15_1832 - 3-isopropylmalate dehydrogenase, at 1,931,640 to 1,932,731 _1832 Position (kb) 1930 1931 1932Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1929.510 kb on - strand, within HP15_1830at 1929.572 kb on - strand, within HP15_1830at 1929.645 kb on + strand, within HP15_1830at 1929.645 kb on - strand, within HP15_1830at 1929.645 kb on - strand, within HP15_1830at 1929.770 kb on + strandat 1929.786 kb on - strandat 1930.003 kb on + strandat 1930.003 kb on + strandat 1930.003 kb on + strandat 1930.005 kb on + strandat 1930.240 kb on + strandat 1931.635 kb on + strandat 1931.641 kb on - strandat 1931.902 kb on - strand, within HP15_1832at 1932.029 kb on - strand, within HP15_1832at 1932.062 kb on + strand, within HP15_1832at 1932.225 kb on + strand, within HP15_1832at 1932.233 kb on - strand, within HP15_1832at 1932.234 kb on + strand, within HP15_1832at 1932.386 kb on + strand, within HP15_1832at 1932.421 kb on - strand, within HP15_1832at 1932.449 kb on - strand, within HP15_1832

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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1,929,510 - HP15_1830 0.82 +1.7
1,929,572 - HP15_1830 0.84 -1.0
1,929,645 + HP15_1830 0.87 -0.0
1,929,645 - HP15_1830 0.87 +1.9
1,929,645 - HP15_1830 0.87 -2.1
1,929,770 + +0.8
1,929,786 - -0.1
1,930,003 + -0.3
1,930,003 + +0.9
1,930,003 + +1.4
1,930,005 + +0.2
1,930,240 + +0.0
1,931,635 + +0.2
1,931,641 - -2.9
1,931,902 - HP15_1832 0.24 -2.1
1,932,029 - HP15_1832 0.36 -0.4
1,932,062 + HP15_1832 0.39 -2.5
1,932,225 + HP15_1832 0.54 -1.6
1,932,233 - HP15_1832 0.54 -0.7
1,932,234 + HP15_1832 0.54 -2.0
1,932,386 + HP15_1832 0.68 -0.5
1,932,421 - HP15_1832 0.72 -3.9
1,932,449 - HP15_1832 0.74 +0.2

Or see this region's nucleotide sequence