Strain Fitness in Marinobacter adhaerens HP15 around HP15_186

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_184 and HP15_185 are separated by 203 nucleotidesHP15_185 and HP15_186 overlap by 14 nucleotidesHP15_186 and HP15_187 are separated by 163 nucleotidesHP15_187 and HP15_188 are separated by 129 nucleotides HP15_184: HP15_184 - copper-binding protein, at 174,857 to 175,384 _184 HP15_185: HP15_185 - two component transcriptional regulator, winged helix family, at 175,588 to 176,253 _185 HP15_186: HP15_186 - two-component sensor, at 176,240 to 177,595 _186 HP15_187: HP15_187 - conserved hypothetical protein, secreted, at 177,759 to 178,142 _187 HP15_188: HP15_188 - plasmid pTOM9 ORF1-like protein, at 178,272 to 178,925 _188 Position (kb) 176 177 178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 175.253 kb on - strand, within HP15_184at 175.277 kb on - strand, within HP15_184at 175.440 kb on - strandat 175.558 kb on - strandat 175.581 kb on - strandat 175.664 kb on + strand, within HP15_185at 175.677 kb on - strand, within HP15_185at 175.716 kb on + strand, within HP15_185at 175.763 kb on + strand, within HP15_185at 175.771 kb on - strand, within HP15_185at 175.848 kb on + strand, within HP15_185at 175.857 kb on + strand, within HP15_185at 175.857 kb on - strand, within HP15_185at 175.865 kb on - strand, within HP15_185at 175.881 kb on - strand, within HP15_185at 175.920 kb on + strand, within HP15_185at 175.960 kb on - strand, within HP15_185at 176.037 kb on - strand, within HP15_185at 176.037 kb on - strand, within HP15_185at 176.037 kb on - strand, within HP15_185at 176.043 kb on - strand, within HP15_185at 176.123 kb on + strand, within HP15_185at 176.265 kb on - strandat 176.348 kb on - strandat 176.435 kb on + strand, within HP15_186at 176.443 kb on - strand, within HP15_186at 176.443 kb on - strand, within HP15_186at 176.443 kb on - strand, within HP15_186at 176.720 kb on - strand, within HP15_186at 176.764 kb on - strand, within HP15_186at 176.787 kb on + strand, within HP15_186at 177.136 kb on - strand, within HP15_186at 177.178 kb on + strand, within HP15_186at 177.221 kb on - strand, within HP15_186at 177.235 kb on + strand, within HP15_186at 177.293 kb on + strand, within HP15_186at 177.293 kb on + strand, within HP15_186at 177.293 kb on + strand, within HP15_186at 177.323 kb on - strand, within HP15_186at 177.325 kb on + strand, within HP15_186at 177.335 kb on - strand, within HP15_186at 177.337 kb on - strand, within HP15_186at 177.352 kb on + strand, within HP15_186at 177.360 kb on - strand, within HP15_186at 177.360 kb on - strand, within HP15_186at 177.362 kb on - strand, within HP15_186at 177.465 kb on + strandat 177.473 kb on - strandat 177.473 kb on - strandat 177.499 kb on + strandat 177.563 kb on + strandat 177.604 kb on + strandat 177.651 kb on + strandat 177.655 kb on - strandat 177.686 kb on - strandat 177.693 kb on + strandat 177.693 kb on + strandat 177.695 kb on - strandat 177.701 kb on - strandat 177.713 kb on - strandat 177.720 kb on - strandat 177.720 kb on - strandat 177.720 kb on - strandat 177.862 kb on + strand, within HP15_187at 177.868 kb on - strand, within HP15_187at 177.916 kb on + strand, within HP15_187at 177.922 kb on - strand, within HP15_187at 177.924 kb on - strand, within HP15_187at 177.962 kb on + strand, within HP15_187at 177.964 kb on + strand, within HP15_187at 178.016 kb on + strand, within HP15_187at 178.051 kb on + strand, within HP15_187at 178.181 kb on - strandat 178.253 kb on + strandat 178.283 kb on - strandat 178.320 kb on - strandat 178.360 kb on + strand, within HP15_188at 178.496 kb on - strand, within HP15_188at 178.583 kb on + strand, within HP15_188at 178.590 kb on + strand, within HP15_188

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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175,253 - HP15_184 0.75 +0.7
175,277 - HP15_184 0.80 -0.8
175,440 - -2.1
175,558 - +1.6
175,581 - +1.4
175,664 + HP15_185 0.11 -0.6
175,677 - HP15_185 0.13 +0.4
175,716 + HP15_185 0.19 +2.6
175,763 + HP15_185 0.26 +0.9
175,771 - HP15_185 0.27 +0.7
175,848 + HP15_185 0.39 -0.2
175,857 + HP15_185 0.40 +0.8
175,857 - HP15_185 0.40 -0.6
175,865 - HP15_185 0.42 -0.9
175,881 - HP15_185 0.44 +0.3
175,920 + HP15_185 0.50 -1.5
175,960 - HP15_185 0.56 +0.8
176,037 - HP15_185 0.67 +2.1
176,037 - HP15_185 0.67 -0.2
176,037 - HP15_185 0.67 -0.4
176,043 - HP15_185 0.68 -0.9
176,123 + HP15_185 0.80 +0.0
176,265 - -0.2
176,348 - -3.0
176,435 + HP15_186 0.14 -2.2
176,443 - HP15_186 0.15 +0.1
176,443 - HP15_186 0.15 +0.5
176,443 - HP15_186 0.15 -2.6
176,720 - HP15_186 0.35 -1.1
176,764 - HP15_186 0.39 -1.9
176,787 + HP15_186 0.40 -2.3
177,136 - HP15_186 0.66 +0.1
177,178 + HP15_186 0.69 +0.5
177,221 - HP15_186 0.72 -2.2
177,235 + HP15_186 0.73 -1.1
177,293 + HP15_186 0.78 +0.5
177,293 + HP15_186 0.78 -2.2
177,293 + HP15_186 0.78 -1.0
177,323 - HP15_186 0.80 -2.6
177,325 + HP15_186 0.80 +0.4
177,335 - HP15_186 0.81 -2.2
177,337 - HP15_186 0.81 -1.8
177,352 + HP15_186 0.82 -2.3
177,360 - HP15_186 0.83 +1.2
177,360 - HP15_186 0.83 -2.0
177,362 - HP15_186 0.83 -4.5
177,465 + -2.3
177,473 - -0.7
177,473 - +0.0
177,499 + +1.1
177,563 + -1.0
177,604 + -0.9
177,651 + -1.5
177,655 - +1.5
177,686 - -0.3
177,693 + -0.5
177,693 + -0.1
177,695 - +0.0
177,701 - -1.2
177,713 - -0.7
177,720 - +0.1
177,720 - +0.4
177,720 - -0.2
177,862 + HP15_187 0.27 -0.7
177,868 - HP15_187 0.28 +0.5
177,916 + HP15_187 0.41 -1.1
177,922 - HP15_187 0.42 -0.7
177,924 - HP15_187 0.43 -0.4
177,962 + HP15_187 0.53 +1.8
177,964 + HP15_187 0.53 +0.1
178,016 + HP15_187 0.67 +0.4
178,051 + HP15_187 0.76 -0.2
178,181 - +0.6
178,253 + +0.1
178,283 - +0.2
178,320 - +0.6
178,360 + HP15_188 0.13 -0.8
178,496 - HP15_188 0.34 -0.0
178,583 + HP15_188 0.48 -0.5
178,590 + HP15_188 0.49 -0.1

Or see this region's nucleotide sequence