Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1758 and HP15_1759 are separated by 199 nucleotides HP15_1759 and HP15_1760 are separated by 24 nucleotides HP15_1760 and HP15_1761 are separated by 45 nucleotides HP15_1761 and HP15_1762 are separated by 42 nucleotides
HP15_1758: HP15_1758 - peptidylprolyl isomerase, FKBP-type, at 1,857,664 to 1,858,125
_1758
HP15_1759: HP15_1759 - protein containing DUF1285, at 1,858,325 to 1,858,891
_1759
HP15_1760: HP15_1760 - oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase, at 1,858,916 to 1,859,812
_1760
HP15_1761: HP15_1761 - phosphohistidine phosphatase, SixA, at 1,859,858 to 1,860,307
_1761
HP15_1762: HP15_1762 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,860,350 to 1,861,417
_1762
Position (kb)
1858
1859
1860 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1857.925 kb on + strand, within HP15_1758 at 1858.200 kb on + strand at 1858.208 kb on - strand at 1858.424 kb on + strand, within HP15_1759 at 1858.479 kb on + strand, within HP15_1759 at 1858.563 kb on - strand, within HP15_1759 at 1858.600 kb on + strand, within HP15_1759 at 1858.681 kb on - strand, within HP15_1759 at 1858.757 kb on + strand, within HP15_1759 at 1858.928 kb on + strand at 1858.936 kb on - strand at 1858.953 kb on + strand at 1859.064 kb on + strand, within HP15_1760 at 1859.064 kb on + strand, within HP15_1760 at 1859.072 kb on - strand, within HP15_1760 at 1859.233 kb on + strand, within HP15_1760 at 1859.272 kb on - strand, within HP15_1760 at 1859.365 kb on + strand, within HP15_1760 at 1859.780 kb on - strand at 1859.804 kb on + strand at 1859.807 kb on + strand at 1859.934 kb on + strand, within HP15_1761 at 1859.944 kb on + strand, within HP15_1761 at 1860.149 kb on + strand, within HP15_1761 at 1860.151 kb on + strand, within HP15_1761 at 1860.151 kb on + strand, within HP15_1761 at 1860.159 kb on - strand, within HP15_1761 at 1860.162 kb on + strand, within HP15_1761 at 1860.170 kb on - strand, within HP15_1761 at 1860.220 kb on + strand, within HP15_1761 at 1860.301 kb on + strand at 1860.309 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 1,857,925 + HP15_1758 0.56 -3.0 1,858,200 + -3.4 1,858,208 - +0.4 1,858,424 + HP15_1759 0.17 -0.2 1,858,479 + HP15_1759 0.27 +1.8 1,858,563 - HP15_1759 0.42 +0.1 1,858,600 + HP15_1759 0.49 +0.3 1,858,681 - HP15_1759 0.63 +1.0 1,858,757 + HP15_1759 0.76 +1.2 1,858,928 + -1.1 1,858,936 - -0.2 1,858,953 + -1.2 1,859,064 + HP15_1760 0.16 -0.9 1,859,064 + HP15_1760 0.16 -0.3 1,859,072 - HP15_1760 0.17 +1.3 1,859,233 + HP15_1760 0.35 +1.6 1,859,272 - HP15_1760 0.40 +0.5 1,859,365 + HP15_1760 0.50 +0.8 1,859,780 - -0.6 1,859,804 + +1.4 1,859,807 + +0.3 1,859,934 + HP15_1761 0.17 -0.5 1,859,944 + HP15_1761 0.19 -1.7 1,860,149 + HP15_1761 0.65 +0.7 1,860,151 + HP15_1761 0.65 -0.9 1,860,151 + HP15_1761 0.65 -0.7 1,860,159 - HP15_1761 0.67 -1.5 1,860,162 + HP15_1761 0.68 +0.5 1,860,170 - HP15_1761 0.69 +0.2 1,860,220 + HP15_1761 0.80 -0.7 1,860,301 + +0.2 1,860,309 + -0.8
Or see this region's nucleotide sequence