Strain Fitness in Marinobacter adhaerens HP15 around HP15_1724

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1723 and HP15_1724 are separated by 172 nucleotidesHP15_1724 and HP15_1725 are separated by 40 nucleotidesHP15_1725 and HP15_1726 overlap by 1 nucleotides HP15_1723: HP15_1723 - hydrolase, carbon-nitrogen family protein, at 1,822,063 to 1,823,583 _1723 HP15_1724: HP15_1724 - conserved hypothetical protein, at 1,823,756 to 1,824,154 _1724 HP15_1725: HP15_1725 - conserved hypothetical protein, at 1,824,195 to 1,824,863 _1725 HP15_1726: HP15_1726 - selenide water dikinase, at 1,824,863 to 1,827,139 _1726 Position (kb) 1823 1824 1825Strain fitness (log2 ratio) -3 -2 -1 0 1at 1822.899 kb on + strand, within HP15_1723at 1822.902 kb on - strand, within HP15_1723at 1823.002 kb on - strand, within HP15_1723at 1823.022 kb on + strand, within HP15_1723at 1823.085 kb on + strand, within HP15_1723at 1823.296 kb on + strand, within HP15_1723at 1823.304 kb on - strand, within HP15_1723at 1823.411 kb on - strand, within HP15_1723at 1823.510 kb on - strandat 1824.037 kb on + strand, within HP15_1724at 1824.435 kb on + strand, within HP15_1725at 1824.491 kb on + strand, within HP15_1725at 1824.547 kb on - strand, within HP15_1725at 1824.596 kb on + strand, within HP15_1725at 1824.706 kb on - strand, within HP15_1725at 1824.706 kb on - strand, within HP15_1725at 1824.797 kb on + strandat 1824.870 kb on - strandat 1824.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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1,822,899 + HP15_1723 0.55 -2.9
1,822,902 - HP15_1723 0.55 -0.6
1,823,002 - HP15_1723 0.62 +0.3
1,823,022 + HP15_1723 0.63 +1.1
1,823,085 + HP15_1723 0.67 -0.7
1,823,296 + HP15_1723 0.81 +0.8
1,823,304 - HP15_1723 0.82 -1.9
1,823,411 - HP15_1723 0.89 -0.1
1,823,510 - -2.5
1,824,037 + HP15_1724 0.70 -0.4
1,824,435 + HP15_1725 0.36 +0.6
1,824,491 + HP15_1725 0.44 +0.8
1,824,547 - HP15_1725 0.53 +0.5
1,824,596 + HP15_1725 0.60 +0.2
1,824,706 - HP15_1725 0.76 +1.6
1,824,706 - HP15_1725 0.76 +0.3
1,824,797 + +0.8
1,824,870 - +0.7
1,824,902 - +1.7

Or see this region's nucleotide sequence