Strain Fitness in Marinobacter adhaerens HP15 around HP15_175

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_174 and HP15_175 are separated by 60 nucleotidesHP15_175 and HP15_176 are separated by 175 nucleotidesHP15_176 and HP15_178 are separated by 24 nucleotides HP15_174: HP15_174 - conserved hypothetical protein, at 165,392 to 166,684 _174 HP15_175: HP15_175 - conserved hypothetical protein, at 166,745 to 167,203 _175 HP15_176: HP15_176 - uncharacterized conserved protein, at 167,379 to 167,765 _176 HP15_178: HP15_178 - copper-translocating P-type ATPase, at 167,790 to 170,063 _178 Position (kb) 166 167 168Strain fitness (log2 ratio) -2 -1 0 1 2at 165.764 kb on - strand, within HP15_174at 165.809 kb on + strand, within HP15_174at 165.809 kb on + strand, within HP15_174at 165.817 kb on - strand, within HP15_174at 165.822 kb on - strand, within HP15_174at 165.834 kb on + strand, within HP15_174at 165.842 kb on - strand, within HP15_174at 165.842 kb on - strand, within HP15_174at 165.862 kb on + strand, within HP15_174at 165.867 kb on + strand, within HP15_174at 165.933 kb on + strand, within HP15_174at 165.962 kb on + strand, within HP15_174at 166.039 kb on + strand, within HP15_174at 166.046 kb on - strand, within HP15_174at 166.069 kb on + strand, within HP15_174at 166.102 kb on + strand, within HP15_174at 166.121 kb on + strand, within HP15_174at 166.121 kb on + strand, within HP15_174at 166.121 kb on + strand, within HP15_174at 166.129 kb on - strand, within HP15_174at 166.129 kb on - strand, within HP15_174at 166.232 kb on - strand, within HP15_174at 166.271 kb on + strand, within HP15_174at 166.271 kb on + strand, within HP15_174at 166.272 kb on + strand, within HP15_174at 166.280 kb on - strand, within HP15_174at 166.287 kb on + strand, within HP15_174at 166.287 kb on + strand, within HP15_174at 166.295 kb on - strand, within HP15_174at 166.297 kb on + strand, within HP15_174at 166.326 kb on + strand, within HP15_174at 166.329 kb on - strand, within HP15_174at 166.329 kb on - strand, within HP15_174at 166.334 kb on - strand, within HP15_174at 166.334 kb on - strand, within HP15_174at 166.339 kb on - strand, within HP15_174at 166.370 kb on + strand, within HP15_174at 166.372 kb on + strand, within HP15_174at 166.535 kb on - strand, within HP15_174at 166.597 kb on - strandat 166.624 kb on + strandat 166.671 kb on + strandat 166.671 kb on + strandat 166.671 kb on + strandat 166.679 kb on - strandat 166.679 kb on - strandat 166.722 kb on - strandat 166.722 kb on - strandat 166.881 kb on - strand, within HP15_175at 166.911 kb on - strand, within HP15_175at 166.943 kb on - strand, within HP15_175at 166.945 kb on + strand, within HP15_175at 166.988 kb on + strand, within HP15_175at 166.996 kb on + strand, within HP15_175at 166.996 kb on - strand, within HP15_175at 167.004 kb on - strand, within HP15_175at 167.008 kb on - strand, within HP15_175at 167.011 kb on + strand, within HP15_175at 167.149 kb on - strand, within HP15_175at 167.189 kb on + strandat 167.190 kb on - strandat 167.301 kb on + strandat 167.315 kb on - strandat 167.320 kb on - strandat 167.404 kb on - strandat 167.410 kb on + strandat 167.410 kb on + strandat 167.410 kb on + strandat 167.410 kb on + strandat 167.411 kb on - strandat 167.418 kb on - strand, within HP15_176at 167.418 kb on - strand, within HP15_176at 167.418 kb on - strand, within HP15_176at 167.440 kb on - strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.497 kb on - strand, within HP15_176at 167.497 kb on - strand, within HP15_176at 167.500 kb on + strand, within HP15_176at 167.582 kb on - strand, within HP15_176at 167.614 kb on + strand, within HP15_176at 167.615 kb on + strand, within HP15_176at 167.679 kb on + strand, within HP15_176at 167.694 kb on + strand, within HP15_176at 167.694 kb on + strand, within HP15_176at 167.707 kb on + strand, within HP15_176at 167.707 kb on + strand, within HP15_176at 167.763 kb on - strandat 167.795 kb on + strandat 167.858 kb on + strandat 168.024 kb on + strand, within HP15_178at 168.037 kb on + strand, within HP15_178at 168.074 kb on + strand, within HP15_178at 168.185 kb on + strand, within HP15_178

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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165,764 - HP15_174 0.29 -0.3
165,809 + HP15_174 0.32 +0.1
165,809 + HP15_174 0.32 -1.4
165,817 - HP15_174 0.33 -1.2
165,822 - HP15_174 0.33 -1.0
165,834 + HP15_174 0.34 +0.4
165,842 - HP15_174 0.35 +0.7
165,842 - HP15_174 0.35 -0.2
165,862 + HP15_174 0.36 -1.0
165,867 + HP15_174 0.37 -1.8
165,933 + HP15_174 0.42 +0.9
165,962 + HP15_174 0.44 -1.3
166,039 + HP15_174 0.50 -0.8
166,046 - HP15_174 0.51 +1.5
166,069 + HP15_174 0.52 +1.4
166,102 + HP15_174 0.55 +0.7
166,121 + HP15_174 0.56 +0.9
166,121 + HP15_174 0.56 +1.9
166,121 + HP15_174 0.56 +2.0
166,129 - HP15_174 0.57 +0.5
166,129 - HP15_174 0.57 +2.1
166,232 - HP15_174 0.65 +1.1
166,271 + HP15_174 0.68 +0.9
166,271 + HP15_174 0.68 +0.9
166,272 + HP15_174 0.68 -1.4
166,280 - HP15_174 0.69 +1.0
166,287 + HP15_174 0.69 +1.7
166,287 + HP15_174 0.69 +0.3
166,295 - HP15_174 0.70 -1.0
166,297 + HP15_174 0.70 +0.1
166,326 + HP15_174 0.72 +1.6
166,329 - HP15_174 0.72 -0.1
166,329 - HP15_174 0.72 +1.2
166,334 - HP15_174 0.73 +2.1
166,334 - HP15_174 0.73 -0.2
166,339 - HP15_174 0.73 +0.4
166,370 + HP15_174 0.76 -0.5
166,372 + HP15_174 0.76 +0.9
166,535 - HP15_174 0.88 +0.4
166,597 - +0.2
166,624 + -0.0
166,671 + -0.9
166,671 + -0.0
166,671 + +0.5
166,679 - +1.1
166,679 - -2.0
166,722 - -1.0
166,722 - -1.3
166,881 - HP15_175 0.30 +1.3
166,911 - HP15_175 0.36 +0.4
166,943 - HP15_175 0.43 +0.3
166,945 + HP15_175 0.44 +0.3
166,988 + HP15_175 0.53 +1.5
166,996 + HP15_175 0.55 +0.5
166,996 - HP15_175 0.55 -0.8
167,004 - HP15_175 0.56 -0.1
167,008 - HP15_175 0.57 -0.3
167,011 + HP15_175 0.58 +0.1
167,149 - HP15_175 0.88 -0.3
167,189 + +1.1
167,190 - -0.8
167,301 + -0.3
167,315 - +2.4
167,320 - +0.7
167,404 - -0.2
167,410 + -0.2
167,410 + +0.5
167,410 + -0.3
167,410 + -0.2
167,411 - +0.2
167,418 - HP15_176 0.10 +0.3
167,418 - HP15_176 0.10 -0.8
167,418 - HP15_176 0.10 -0.7
167,440 - HP15_176 0.16 -0.6
167,489 + HP15_176 0.28 -0.2
167,489 + HP15_176 0.28 +0.2
167,489 + HP15_176 0.28 -2.3
167,489 + HP15_176 0.28 +0.3
167,489 + HP15_176 0.28 -2.0
167,489 + HP15_176 0.28 -0.5
167,497 - HP15_176 0.30 -0.6
167,497 - HP15_176 0.30 -0.1
167,500 + HP15_176 0.31 -0.0
167,582 - HP15_176 0.52 +0.6
167,614 + HP15_176 0.61 -0.2
167,615 + HP15_176 0.61 +1.0
167,679 + HP15_176 0.78 -0.7
167,694 + HP15_176 0.81 -0.7
167,694 + HP15_176 0.81 -0.7
167,707 + HP15_176 0.85 -0.5
167,707 + HP15_176 0.85 +1.1
167,763 - +1.3
167,795 + -0.0
167,858 + +1.5
168,024 + HP15_178 0.10 +0.9
168,037 + HP15_178 0.11 -0.0
168,074 + HP15_178 0.12 -0.5
168,185 + HP15_178 0.17 +2.0

Or see this region's nucleotide sequence