Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1693 and HP15_1694 are separated by 262 nucleotides HP15_1694 and HP15_1695 are separated by 110 nucleotides HP15_1695 and HP15_1696 are separated by 183 nucleotides HP15_1696 and HP15_1697 are separated by 2 nucleotides
HP15_1693: HP15_1693 - conserved hypothetical protein, at 1,782,917 to 1,783,720
_1693
HP15_1694: HP15_1694 - conserved hypothetical protein, at 1,783,983 to 1,785,311
_1694
HP15_1695: HP15_1695 - protein containing zinc finger, DksA/TraR C4-type domain, at 1,785,422 to 1,785,688
_1695
HP15_1696: HP15_1696 - transcriptional regulator, MerR family, at 1,785,872 to 1,786,288
_1696
HP15_1697: HP15_1697 - conserved hypothetical protein, at 1,786,291 to 1,787,217
_1697
Position (kb)
1783
1784
1785
1786 Strain fitness (log2 ratio)
-1
0
1
2 at 1783.052 kb on - strand, within HP15_1693 at 1783.249 kb on - strand, within HP15_1693 at 1783.303 kb on - strand, within HP15_1693 at 1783.328 kb on - strand, within HP15_1693 at 1783.555 kb on - strand, within HP15_1693 at 1783.645 kb on + strand at 1783.648 kb on - strand at 1783.652 kb on + strand at 1783.659 kb on + strand at 1783.665 kb on - strand at 1783.685 kb on - strand at 1783.723 kb on + strand at 1783.822 kb on + strand at 1783.822 kb on + strand at 1783.822 kb on + strand at 1783.859 kb on - strand at 1783.859 kb on - strand at 1784.207 kb on + strand, within HP15_1694 at 1784.259 kb on + strand, within HP15_1694 at 1784.267 kb on - strand, within HP15_1694 at 1784.267 kb on - strand, within HP15_1694 at 1784.295 kb on + strand, within HP15_1694 at 1784.295 kb on + strand, within HP15_1694 at 1784.295 kb on + strand, within HP15_1694 at 1784.303 kb on - strand, within HP15_1694 at 1784.378 kb on - strand, within HP15_1694 at 1784.520 kb on + strand, within HP15_1694 at 1784.527 kb on - strand, within HP15_1694 at 1784.567 kb on + strand, within HP15_1694 at 1784.643 kb on + strand, within HP15_1694 at 1784.653 kb on + strand, within HP15_1694 at 1784.653 kb on + strand, within HP15_1694 at 1784.661 kb on - strand, within HP15_1694 at 1784.661 kb on - strand, within HP15_1694 at 1784.714 kb on - strand, within HP15_1694 at 1784.791 kb on + strand, within HP15_1694 at 1784.797 kb on - strand, within HP15_1694 at 1785.108 kb on + strand, within HP15_1694 at 1785.119 kb on + strand, within HP15_1694 at 1785.202 kb on + strand at 1785.507 kb on + strand, within HP15_1695 at 1785.516 kb on - strand, within HP15_1695 at 1785.688 kb on + strand at 1786.023 kb on - strand, within HP15_1696 at 1786.057 kb on + strand, within HP15_1696 at 1786.065 kb on - strand, within HP15_1696 at 1786.198 kb on - strand, within HP15_1696 at 1786.274 kb on - strand at 1786.289 kb on + strand at 1786.295 kb on - strand at 1786.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 1,783,052 - HP15_1693 0.17 -1.6 1,783,249 - HP15_1693 0.41 +1.8 1,783,303 - HP15_1693 0.48 -0.6 1,783,328 - HP15_1693 0.51 +1.1 1,783,555 - HP15_1693 0.79 +0.0 1,783,645 + +0.9 1,783,648 - +0.6 1,783,652 + +2.1 1,783,659 + -0.6 1,783,665 - -0.0 1,783,685 - +0.9 1,783,723 + +1.3 1,783,822 + -1.4 1,783,822 + +1.3 1,783,822 + -0.0 1,783,859 - +1.1 1,783,859 - +0.8 1,784,207 + HP15_1694 0.17 +0.2 1,784,259 + HP15_1694 0.21 +0.6 1,784,267 - HP15_1694 0.21 +0.3 1,784,267 - HP15_1694 0.21 +1.5 1,784,295 + HP15_1694 0.23 +0.8 1,784,295 + HP15_1694 0.23 +0.3 1,784,295 + HP15_1694 0.23 +1.4 1,784,303 - HP15_1694 0.24 +0.1 1,784,378 - HP15_1694 0.30 -1.7 1,784,520 + HP15_1694 0.40 -0.0 1,784,527 - HP15_1694 0.41 +1.5 1,784,567 + HP15_1694 0.44 +1.5 1,784,643 + HP15_1694 0.50 -0.3 1,784,653 + HP15_1694 0.50 +0.0 1,784,653 + HP15_1694 0.50 +1.2 1,784,661 - HP15_1694 0.51 +0.6 1,784,661 - HP15_1694 0.51 +0.5 1,784,714 - HP15_1694 0.55 -1.3 1,784,791 + HP15_1694 0.61 -0.4 1,784,797 - HP15_1694 0.61 +1.4 1,785,108 + HP15_1694 0.85 -0.8 1,785,119 + HP15_1694 0.85 +0.9 1,785,202 + +0.2 1,785,507 + HP15_1695 0.32 +0.7 1,785,516 - HP15_1695 0.35 +1.5 1,785,688 + +0.3 1,786,023 - HP15_1696 0.36 -1.2 1,786,057 + HP15_1696 0.44 +0.8 1,786,065 - HP15_1696 0.46 +0.1 1,786,198 - HP15_1696 0.78 +0.5 1,786,274 - -0.2 1,786,289 + +0.8 1,786,295 - +0.9 1,786,295 - +0.2
Or see this region's nucleotide sequence