Strain Fitness in Marinobacter adhaerens HP15 around HP15_1694

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1693 and HP15_1694 are separated by 262 nucleotidesHP15_1694 and HP15_1695 are separated by 110 nucleotidesHP15_1695 and HP15_1696 are separated by 183 nucleotidesHP15_1696 and HP15_1697 are separated by 2 nucleotides HP15_1693: HP15_1693 - conserved hypothetical protein, at 1,782,917 to 1,783,720 _1693 HP15_1694: HP15_1694 - conserved hypothetical protein, at 1,783,983 to 1,785,311 _1694 HP15_1695: HP15_1695 - protein containing zinc finger, DksA/TraR C4-type domain, at 1,785,422 to 1,785,688 _1695 HP15_1696: HP15_1696 - transcriptional regulator, MerR family, at 1,785,872 to 1,786,288 _1696 HP15_1697: HP15_1697 - conserved hypothetical protein, at 1,786,291 to 1,787,217 _1697 Position (kb) 1783 1784 1785 1786Strain fitness (log2 ratio) -1 0 1 2at 1783.052 kb on - strand, within HP15_1693at 1783.249 kb on - strand, within HP15_1693at 1783.303 kb on - strand, within HP15_1693at 1783.328 kb on - strand, within HP15_1693at 1783.555 kb on - strand, within HP15_1693at 1783.645 kb on + strandat 1783.648 kb on - strandat 1783.652 kb on + strandat 1783.659 kb on + strandat 1783.665 kb on - strandat 1783.685 kb on - strandat 1783.723 kb on + strandat 1783.822 kb on + strandat 1783.822 kb on + strandat 1783.822 kb on + strandat 1783.859 kb on - strandat 1783.859 kb on - strandat 1784.207 kb on + strand, within HP15_1694at 1784.259 kb on + strand, within HP15_1694at 1784.267 kb on - strand, within HP15_1694at 1784.267 kb on - strand, within HP15_1694at 1784.295 kb on + strand, within HP15_1694at 1784.295 kb on + strand, within HP15_1694at 1784.295 kb on + strand, within HP15_1694at 1784.303 kb on - strand, within HP15_1694at 1784.378 kb on - strand, within HP15_1694at 1784.520 kb on + strand, within HP15_1694at 1784.527 kb on - strand, within HP15_1694at 1784.567 kb on + strand, within HP15_1694at 1784.643 kb on + strand, within HP15_1694at 1784.653 kb on + strand, within HP15_1694at 1784.653 kb on + strand, within HP15_1694at 1784.661 kb on - strand, within HP15_1694at 1784.661 kb on - strand, within HP15_1694at 1784.714 kb on - strand, within HP15_1694at 1784.791 kb on + strand, within HP15_1694at 1784.797 kb on - strand, within HP15_1694at 1785.108 kb on + strand, within HP15_1694at 1785.119 kb on + strand, within HP15_1694at 1785.202 kb on + strandat 1785.507 kb on + strand, within HP15_1695at 1785.516 kb on - strand, within HP15_1695at 1785.688 kb on + strandat 1786.023 kb on - strand, within HP15_1696at 1786.057 kb on + strand, within HP15_1696at 1786.065 kb on - strand, within HP15_1696at 1786.198 kb on - strand, within HP15_1696at 1786.274 kb on - strandat 1786.289 kb on + strandat 1786.295 kb on - strandat 1786.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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1,783,052 - HP15_1693 0.17 -1.6
1,783,249 - HP15_1693 0.41 +1.8
1,783,303 - HP15_1693 0.48 -0.6
1,783,328 - HP15_1693 0.51 +1.1
1,783,555 - HP15_1693 0.79 +0.0
1,783,645 + +0.9
1,783,648 - +0.6
1,783,652 + +2.1
1,783,659 + -0.6
1,783,665 - -0.0
1,783,685 - +0.9
1,783,723 + +1.3
1,783,822 + -1.4
1,783,822 + +1.3
1,783,822 + -0.0
1,783,859 - +1.1
1,783,859 - +0.8
1,784,207 + HP15_1694 0.17 +0.2
1,784,259 + HP15_1694 0.21 +0.6
1,784,267 - HP15_1694 0.21 +0.3
1,784,267 - HP15_1694 0.21 +1.5
1,784,295 + HP15_1694 0.23 +0.8
1,784,295 + HP15_1694 0.23 +0.3
1,784,295 + HP15_1694 0.23 +1.4
1,784,303 - HP15_1694 0.24 +0.1
1,784,378 - HP15_1694 0.30 -1.7
1,784,520 + HP15_1694 0.40 -0.0
1,784,527 - HP15_1694 0.41 +1.5
1,784,567 + HP15_1694 0.44 +1.5
1,784,643 + HP15_1694 0.50 -0.3
1,784,653 + HP15_1694 0.50 +0.0
1,784,653 + HP15_1694 0.50 +1.2
1,784,661 - HP15_1694 0.51 +0.6
1,784,661 - HP15_1694 0.51 +0.5
1,784,714 - HP15_1694 0.55 -1.3
1,784,791 + HP15_1694 0.61 -0.4
1,784,797 - HP15_1694 0.61 +1.4
1,785,108 + HP15_1694 0.85 -0.8
1,785,119 + HP15_1694 0.85 +0.9
1,785,202 + +0.2
1,785,507 + HP15_1695 0.32 +0.7
1,785,516 - HP15_1695 0.35 +1.5
1,785,688 + +0.3
1,786,023 - HP15_1696 0.36 -1.2
1,786,057 + HP15_1696 0.44 +0.8
1,786,065 - HP15_1696 0.46 +0.1
1,786,198 - HP15_1696 0.78 +0.5
1,786,274 - -0.2
1,786,289 + +0.8
1,786,295 - +0.9
1,786,295 - +0.2

Or see this region's nucleotide sequence