Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1675 and HP15_1676 are separated by 53 nucleotides HP15_1676 and HP15_1677 are separated by 176 nucleotides HP15_1677 and HP15_1678 are separated by 24 nucleotides HP15_1678 and HP15_1679 overlap by 4 nucleotides
HP15_1675: HP15_1675 - hypothetical protein, at 1,764,506 to 1,764,793
_1675
HP15_1676: HP15_1676 - protein containing alkylhydroperoxidase AhpD core / Carboxymuconolactone decarboxylase, at 1,764,847 to 1,765,428
_1676
HP15_1677: HP15_1677 - transcriptional regulator, LysR family protein, at 1,765,605 to 1,766,438
_1677
HP15_1678: HP15_1678 - FMN reductase, NADPH-dependent, at 1,766,463 to 1,767,005
_1678
HP15_1679: HP15_1679 - pirin, at 1,767,002 to 1,767,781
_1679
Position (kb)
1765
1766
1767 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1764.709 kb on - strand, within HP15_1675 at 1764.723 kb on - strand, within HP15_1675 at 1764.930 kb on - strand, within HP15_1676 at 1764.975 kb on - strand, within HP15_1676 at 1764.975 kb on - strand, within HP15_1676 at 1764.975 kb on - strand, within HP15_1676 at 1765.022 kb on + strand, within HP15_1676 at 1765.028 kb on - strand, within HP15_1676 at 1765.226 kb on + strand, within HP15_1676 at 1765.253 kb on - strand, within HP15_1676 at 1765.328 kb on + strand, within HP15_1676 at 1765.329 kb on - strand, within HP15_1676 at 1765.336 kb on - strand, within HP15_1676 at 1765.336 kb on - strand, within HP15_1676 at 1765.377 kb on + strand at 1765.380 kb on - strand at 1765.569 kb on + strand at 1765.569 kb on + strand at 1765.935 kb on + strand, within HP15_1677 at 1766.002 kb on - strand, within HP15_1677 at 1766.002 kb on - strand, within HP15_1677 at 1766.026 kb on - strand, within HP15_1677 at 1766.026 kb on - strand, within HP15_1677 at 1766.494 kb on + strand at 1766.502 kb on - strand at 1766.502 kb on - strand at 1766.642 kb on - strand, within HP15_1678 at 1766.782 kb on - strand, within HP15_1678 at 1767.011 kb on + strand at 1767.171 kb on + strand, within HP15_1679 at 1767.179 kb on - strand, within HP15_1679 at 1767.207 kb on + strand, within HP15_1679 at 1767.207 kb on + strand, within HP15_1679 at 1767.207 kb on + strand, within HP15_1679 at 1767.386 kb on - strand, within HP15_1679 at 1767.408 kb on + strand, within HP15_1679
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 1,764,709 - HP15_1675 0.70 +0.7 1,764,723 - HP15_1675 0.75 -0.2 1,764,930 - HP15_1676 0.14 -0.3 1,764,975 - HP15_1676 0.22 -0.0 1,764,975 - HP15_1676 0.22 +0.4 1,764,975 - HP15_1676 0.22 +0.4 1,765,022 + HP15_1676 0.30 +1.8 1,765,028 - HP15_1676 0.31 +0.1 1,765,226 + HP15_1676 0.65 -0.0 1,765,253 - HP15_1676 0.70 -0.5 1,765,328 + HP15_1676 0.83 -1.7 1,765,329 - HP15_1676 0.83 -0.0 1,765,336 - HP15_1676 0.84 +0.2 1,765,336 - HP15_1676 0.84 +0.8 1,765,377 + +0.0 1,765,380 - +1.2 1,765,569 + +1.3 1,765,569 + -2.5 1,765,935 + HP15_1677 0.40 +0.3 1,766,002 - HP15_1677 0.48 +1.5 1,766,002 - HP15_1677 0.48 -1.4 1,766,026 - HP15_1677 0.50 +0.3 1,766,026 - HP15_1677 0.50 +0.7 1,766,494 + -0.1 1,766,502 - +1.2 1,766,502 - +0.9 1,766,642 - HP15_1678 0.33 +0.8 1,766,782 - HP15_1678 0.59 +0.7 1,767,011 + +1.6 1,767,171 + HP15_1679 0.22 +0.1 1,767,179 - HP15_1679 0.23 -1.9 1,767,207 + HP15_1679 0.26 +1.4 1,767,207 + HP15_1679 0.26 -1.3 1,767,207 + HP15_1679 0.26 -0.4 1,767,386 - HP15_1679 0.49 +0.7 1,767,408 + HP15_1679 0.52 -0.2
Or see this region's nucleotide sequence