Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1503 and HP15_1504 are separated by 53 nucleotides HP15_1504 and HP15_1505 are separated by 103 nucleotides HP15_1505 and HP15_1506 are separated by 145 nucleotides
HP15_1503: HP15_1503 - nucleoside-diphosphate sugar epimerase, at 1,579,904 to 1,580,830
_1503
HP15_1504: HP15_1504 - cobalamin (vitamin B12) biosynthesis CbiX protein, at 1,580,884 to 1,581,258
_1504
HP15_1505: HP15_1505 - protein containing DUF924, bacterial, at 1,581,362 to 1,581,964
_1505
HP15_1506: HP15_1506 - secreted protein containing YkuD domain, at 1,582,110 to 1,583,147
_1506
HP15_tRNA29: HP15_tRNA29 - tRNA-Gly, at 1,582,884 to 1,582,959
_tRNA29
Position (kb)
1581
1582 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1580.540 kb on - strand, within HP15_1503 at 1580.600 kb on + strand, within HP15_1503 at 1580.839 kb on + strand at 1580.867 kb on + strand at 1581.132 kb on + strand, within HP15_1504 at 1581.466 kb on - strand, within HP15_1505 at 1581.473 kb on - strand at 1581.665 kb on - strand, within HP15_1505 at 1581.674 kb on + strand, within HP15_1505 at 1581.739 kb on + strand, within HP15_1505 at 1581.754 kb on + strand, within HP15_1505 at 1581.798 kb on + strand, within HP15_1505 at 1581.959 kb on + strand at 1581.959 kb on - strand at 1581.969 kb on + strand at 1582.287 kb on + strand, within HP15_1506 at 1582.295 kb on - strand, within HP15_1506 at 1582.473 kb on - strand, within HP15_1506 at 1582.480 kb on + strand, within HP15_1506 at 1582.483 kb on - strand, within HP15_1506 at 1582.483 kb on - strand, within HP15_1506 at 1582.483 kb on - strand, within HP15_1506 at 1582.656 kb on - strand, within HP15_1506 at 1582.725 kb on - strand, within HP15_1506 at 1582.746 kb on - strand, within HP15_1506
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 1,580,540 - HP15_1503 0.69 +0.6 1,580,600 + HP15_1503 0.75 +0.4 1,580,839 + -0.2 1,580,867 + -0.9 1,581,132 + HP15_1504 0.66 -3.7 1,581,466 - HP15_1505 0.17 +0.7 1,581,473 - -0.2 1,581,665 - HP15_1505 0.50 -0.6 1,581,674 + HP15_1505 0.52 -0.4 1,581,739 + HP15_1505 0.63 +0.1 1,581,754 + HP15_1505 0.65 +1.0 1,581,798 + HP15_1505 0.72 +0.5 1,581,959 + +0.4 1,581,959 - +1.0 1,581,969 + -0.1 1,582,287 + HP15_1506 0.17 -0.7 1,582,295 - HP15_1506 0.18 +0.8 1,582,473 - HP15_1506 0.35 -2.2 1,582,480 + HP15_1506 0.36 +0.2 1,582,483 - HP15_1506 0.36 -1.2 1,582,483 - HP15_1506 0.36 +0.1 1,582,483 - HP15_1506 0.36 +0.6 1,582,656 - HP15_1506 0.53 -1.0 1,582,725 - HP15_1506 0.59 -1.8 1,582,746 - HP15_1506 0.61 -0.5
Or see this region's nucleotide sequence