Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1433 and HP15_1434 are separated by 1 nucleotides HP15_1434 and HP15_1435 are separated by 150 nucleotides HP15_1435 and HP15_1436 are separated by 61 nucleotides HP15_1436 and HP15_1437 are separated by 59 nucleotides
HP15_1433: HP15_1433 - conserved hypothetical protein, secreted, at 1,512,390 to 1,512,887
_1433
HP15_1434: HP15_1434 - conserved hypothetical protein, at 1,512,889 to 1,513,209
_1434
HP15_1435: HP15_1435 - thioesterase superfamily protein, at 1,513,360 to 1,513,839
_1435
HP15_1436: HP15_1436 - protein containing DUF1330, at 1,513,901 to 1,514,191
_1436
HP15_1437: HP15_1437 - transcriptional regulator, LysR family protein, at 1,514,251 to 1,515,096
_1437
Position (kb)
1513
1514 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1512.513 kb on - strand, within HP15_1433 at 1512.577 kb on + strand, within HP15_1433 at 1512.577 kb on + strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.662 kb on - strand, within HP15_1433 at 1512.852 kb on + strand at 1512.968 kb on - strand, within HP15_1434 at 1513.017 kb on - strand, within HP15_1434 at 1513.024 kb on - strand, within HP15_1434 at 1513.073 kb on + strand, within HP15_1434 at 1513.095 kb on + strand, within HP15_1434 at 1513.121 kb on - strand, within HP15_1434 at 1513.141 kb on - strand, within HP15_1434 at 1513.417 kb on - strand, within HP15_1435 at 1513.486 kb on - strand, within HP15_1435 at 1513.626 kb on - strand, within HP15_1435 at 1513.683 kb on + strand, within HP15_1435 at 1513.691 kb on + strand, within HP15_1435 at 1513.691 kb on - strand, within HP15_1435 at 1513.691 kb on - strand, within HP15_1435 at 1513.734 kb on + strand, within HP15_1435 at 1513.759 kb on + strand, within HP15_1435 at 1513.801 kb on - strand at 1513.912 kb on + strand at 1513.983 kb on - strand, within HP15_1436 at 1514.052 kb on - strand, within HP15_1436 at 1514.089 kb on + strand, within HP15_1436 at 1514.155 kb on + strand, within HP15_1436 at 1514.163 kb on - strand at 1514.216 kb on - strand at 1514.257 kb on + strand at 1514.340 kb on + strand, within HP15_1437 at 1514.497 kb on - strand, within HP15_1437 at 1514.667 kb on + strand, within HP15_1437 at 1514.756 kb on + strand, within HP15_1437 at 1514.788 kb on + strand, within HP15_1437 at 1514.813 kb on - strand, within HP15_1437
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 1,512,513 - HP15_1433 0.25 -0.4 1,512,577 + HP15_1433 0.38 -1.4 1,512,577 + HP15_1433 0.38 +0.1 1,512,585 - HP15_1433 0.39 -0.4 1,512,585 - HP15_1433 0.39 +0.5 1,512,585 - HP15_1433 0.39 +1.4 1,512,662 - HP15_1433 0.55 -3.1 1,512,852 + -0.1 1,512,968 - HP15_1434 0.25 -0.7 1,513,017 - HP15_1434 0.40 +0.7 1,513,024 - HP15_1434 0.42 +1.8 1,513,073 + HP15_1434 0.57 +0.5 1,513,095 + HP15_1434 0.64 -0.2 1,513,121 - HP15_1434 0.72 +2.0 1,513,141 - HP15_1434 0.79 -0.3 1,513,417 - HP15_1435 0.12 -0.1 1,513,486 - HP15_1435 0.26 +2.0 1,513,626 - HP15_1435 0.55 +0.0 1,513,683 + HP15_1435 0.67 -0.7 1,513,691 + HP15_1435 0.69 -0.7 1,513,691 - HP15_1435 0.69 -0.1 1,513,691 - HP15_1435 0.69 -0.5 1,513,734 + HP15_1435 0.78 +0.2 1,513,759 + HP15_1435 0.83 +1.8 1,513,801 - -0.3 1,513,912 + +1.5 1,513,983 - HP15_1436 0.28 -1.0 1,514,052 - HP15_1436 0.52 +1.7 1,514,089 + HP15_1436 0.65 -0.7 1,514,155 + HP15_1436 0.87 +1.9 1,514,163 - +0.3 1,514,216 - +1.0 1,514,257 + +1.5 1,514,340 + HP15_1437 0.11 -0.8 1,514,497 - HP15_1437 0.29 +0.0 1,514,667 + HP15_1437 0.49 -0.0 1,514,756 + HP15_1437 0.60 -1.9 1,514,788 + HP15_1437 0.63 +0.5 1,514,813 - HP15_1437 0.66 -2.1
Or see this region's nucleotide sequence