Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1410 and HP15_1411 are separated by 88 nucleotides HP15_1411 and HP15_1412 are separated by 13 nucleotides HP15_1412 and HP15_1413 are separated by 144 nucleotides HP15_1413 and HP15_1414 are separated by 16 nucleotides
HP15_1410: HP15_1410 - iron(III) compound receptor, at 1,489,076 to 1,491,175
_1410
HP15_1411: HP15_1411 - hypothetical 3-methyladenine DNA glycosylase, at 1,491,264 to 1,491,929
_1411
HP15_1412: HP15_1412 - conserved hypothetical protein, membrane, at 1,491,943 to 1,493,067
_1412
HP15_1413: HP15_1413 - protein containing GCN5-related N-acetyltransferase domain, at 1,493,212 to 1,493,787
_1413
HP15_1414: HP15_1414 - histone deacetylase superfamily protein, at 1,493,804 to 1,494,910
_1414
Position (kb)
1491
1492
1493
1494 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1490.958 kb on + strand, within HP15_1410 at 1490.963 kb on + strand, within HP15_1410 at 1491.136 kb on + strand at 1491.144 kb on - strand at 1491.149 kb on + strand at 1491.397 kb on + strand, within HP15_1411 at 1491.400 kb on - strand, within HP15_1411 at 1491.400 kb on - strand, within HP15_1411 at 1491.405 kb on - strand, within HP15_1411 at 1491.431 kb on + strand, within HP15_1411 at 1491.431 kb on + strand, within HP15_1411 at 1491.508 kb on + strand, within HP15_1411 at 1491.530 kb on + strand, within HP15_1411 at 1491.535 kb on + strand, within HP15_1411 at 1491.715 kb on - strand, within HP15_1411 at 1491.777 kb on - strand, within HP15_1411 at 1491.932 kb on - strand at 1492.157 kb on + strand, within HP15_1412 at 1492.165 kb on - strand, within HP15_1412 at 1492.184 kb on - strand, within HP15_1412 at 1492.249 kb on + strand, within HP15_1412 at 1492.268 kb on + strand, within HP15_1412 at 1492.274 kb on - strand, within HP15_1412 at 1492.325 kb on + strand, within HP15_1412 at 1492.671 kb on - strand, within HP15_1412 at 1492.707 kb on + strand, within HP15_1412 at 1492.721 kb on + strand, within HP15_1412 at 1492.763 kb on + strand, within HP15_1412 at 1492.894 kb on - strand, within HP15_1412 at 1493.104 kb on + strand at 1493.104 kb on + strand at 1493.112 kb on - strand at 1493.169 kb on - strand at 1493.228 kb on - strand at 1493.265 kb on + strand at 1493.564 kb on + strand, within HP15_1413 at 1493.605 kb on + strand, within HP15_1413 at 1493.625 kb on - strand, within HP15_1413 at 1493.650 kb on + strand, within HP15_1413 at 1493.695 kb on + strand, within HP15_1413 at 1493.860 kb on + strand at 1493.954 kb on - strand, within HP15_1414 at 1493.973 kb on - strand, within HP15_1414
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 1,490,958 + HP15_1410 0.90 -0.1 1,490,963 + HP15_1410 0.90 +1.9 1,491,136 + +0.3 1,491,144 - +1.9 1,491,149 + -0.0 1,491,397 + HP15_1411 0.20 +0.8 1,491,400 - HP15_1411 0.20 +0.1 1,491,400 - HP15_1411 0.20 +0.9 1,491,405 - HP15_1411 0.21 +1.2 1,491,431 + HP15_1411 0.25 +0.1 1,491,431 + HP15_1411 0.25 +0.1 1,491,508 + HP15_1411 0.37 +0.7 1,491,530 + HP15_1411 0.40 +0.3 1,491,535 + HP15_1411 0.41 -0.6 1,491,715 - HP15_1411 0.68 -0.1 1,491,777 - HP15_1411 0.77 +0.4 1,491,932 - -0.8 1,492,157 + HP15_1412 0.19 -0.6 1,492,165 - HP15_1412 0.20 -1.2 1,492,184 - HP15_1412 0.21 +0.6 1,492,249 + HP15_1412 0.27 -0.0 1,492,268 + HP15_1412 0.29 -1.9 1,492,274 - HP15_1412 0.29 +0.3 1,492,325 + HP15_1412 0.34 -0.2 1,492,671 - HP15_1412 0.65 +0.9 1,492,707 + HP15_1412 0.68 +1.1 1,492,721 + HP15_1412 0.69 -0.9 1,492,763 + HP15_1412 0.73 -1.0 1,492,894 - HP15_1412 0.85 +2.0 1,493,104 + -0.2 1,493,104 + +1.5 1,493,112 - +0.9 1,493,169 - +0.7 1,493,228 - -0.2 1,493,265 + +0.8 1,493,564 + HP15_1413 0.61 +1.9 1,493,605 + HP15_1413 0.68 +0.4 1,493,625 - HP15_1413 0.72 +0.5 1,493,650 + HP15_1413 0.76 +1.4 1,493,695 + HP15_1413 0.84 +1.1 1,493,860 + -0.1 1,493,954 - HP15_1414 0.14 -0.0 1,493,973 - HP15_1414 0.15 +0.2
Or see this region's nucleotide sequence