Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1393 and HP15_1394 overlap by 4 nucleotides HP15_1394 and HP15_1395 are separated by 248 nucleotides HP15_1395 and HP15_1396 are separated by 6 nucleotides HP15_1396 and HP15_1397 are separated by 314 nucleotides
HP15_1393: HP15_1393 - thioesterase superfamily protein, at 1,468,302 to 1,468,772
_1393
HP15_1394: HP15_1394 - thioesterase superfamily protein, at 1,468,769 to 1,469,203
_1394
HP15_1395: HP15_1395 - heat shock protein 90, at 1,469,452 to 1,471,344
_1395
HP15_1396: HP15_1396 - conserved hypothetical protein, at 1,471,351 to 1,471,569
_1396
HP15_1397: HP15_1397 - peroxidase/catalase HPI, at 1,471,884 to 1,474,106
_1397
Position (kb)
1469
1470
1471
1472 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1468.477 kb on + strand, within HP15_1393 at 1468.497 kb on + strand, within HP15_1393 at 1468.566 kb on + strand, within HP15_1393 at 1468.607 kb on - strand, within HP15_1393 at 1468.759 kb on - strand at 1468.921 kb on + strand, within HP15_1394 at 1469.047 kb on + strand, within HP15_1394 at 1469.310 kb on + strand at 1469.773 kb on - strand, within HP15_1395 at 1469.826 kb on + strand, within HP15_1395 at 1469.914 kb on - strand, within HP15_1395 at 1469.998 kb on - strand, within HP15_1395 at 1470.109 kb on + strand, within HP15_1395 at 1470.151 kb on - strand, within HP15_1395 at 1470.161 kb on - strand, within HP15_1395 at 1470.185 kb on - strand, within HP15_1395 at 1470.245 kb on + strand, within HP15_1395 at 1470.281 kb on - strand, within HP15_1395 at 1470.324 kb on - strand, within HP15_1395 at 1470.393 kb on + strand, within HP15_1395 at 1470.608 kb on - strand, within HP15_1395 at 1470.826 kb on - strand, within HP15_1395 at 1470.904 kb on - strand, within HP15_1395 at 1470.917 kb on + strand, within HP15_1395 at 1470.979 kb on + strand, within HP15_1395 at 1471.254 kb on - strand at 1471.256 kb on + strand at 1471.382 kb on + strand, within HP15_1396 at 1471.390 kb on - strand, within HP15_1396 at 1471.390 kb on - strand, within HP15_1396 at 1471.410 kb on + strand, within HP15_1396 at 1471.423 kb on + strand, within HP15_1396 at 1471.433 kb on - strand, within HP15_1396 at 1471.446 kb on - strand, within HP15_1396 at 1471.563 kb on + strand at 1471.571 kb on - strand at 1471.669 kb on - strand at 1471.684 kb on - strand at 1471.693 kb on + strand at 1471.884 kb on - strand at 1471.891 kb on + strand at 1471.949 kb on - strand at 1472.052 kb on - strand at 1472.311 kb on - strand, within HP15_1397
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 1,468,477 + HP15_1393 0.37 -1.7 1,468,497 + HP15_1393 0.41 +0.5 1,468,566 + HP15_1393 0.56 -1.1 1,468,607 - HP15_1393 0.65 -1.1 1,468,759 - -0.3 1,468,921 + HP15_1394 0.35 +0.1 1,469,047 + HP15_1394 0.64 -0.4 1,469,310 + -0.3 1,469,773 - HP15_1395 0.17 +2.5 1,469,826 + HP15_1395 0.20 +0.2 1,469,914 - HP15_1395 0.24 +0.6 1,469,998 - HP15_1395 0.29 +0.6 1,470,109 + HP15_1395 0.35 +0.1 1,470,151 - HP15_1395 0.37 +0.3 1,470,161 - HP15_1395 0.37 +1.1 1,470,185 - HP15_1395 0.39 +0.8 1,470,245 + HP15_1395 0.42 +1.0 1,470,281 - HP15_1395 0.44 +0.4 1,470,324 - HP15_1395 0.46 +0.6 1,470,393 + HP15_1395 0.50 -2.6 1,470,608 - HP15_1395 0.61 +0.7 1,470,826 - HP15_1395 0.73 +0.5 1,470,904 - HP15_1395 0.77 -1.3 1,470,917 + HP15_1395 0.77 -1.6 1,470,979 + HP15_1395 0.81 -1.1 1,471,254 - +0.2 1,471,256 + -0.1 1,471,382 + HP15_1396 0.14 -0.6 1,471,390 - HP15_1396 0.18 -0.9 1,471,390 - HP15_1396 0.18 -0.6 1,471,410 + HP15_1396 0.27 +1.0 1,471,423 + HP15_1396 0.33 +0.3 1,471,433 - HP15_1396 0.37 +0.8 1,471,446 - HP15_1396 0.43 -1.9 1,471,563 + -1.5 1,471,571 - +0.0 1,471,669 - -0.2 1,471,684 - +0.5 1,471,693 + -0.6 1,471,884 - -0.6 1,471,891 + -0.4 1,471,949 - -0.8 1,472,052 - -1.3 1,472,311 - HP15_1397 0.19 +1.5
Or see this region's nucleotide sequence