Strain Fitness in Marinobacter adhaerens HP15 around HP15_1395

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1393 and HP15_1394 overlap by 4 nucleotidesHP15_1394 and HP15_1395 are separated by 248 nucleotidesHP15_1395 and HP15_1396 are separated by 6 nucleotidesHP15_1396 and HP15_1397 are separated by 314 nucleotides HP15_1393: HP15_1393 - thioesterase superfamily protein, at 1,468,302 to 1,468,772 _1393 HP15_1394: HP15_1394 - thioesterase superfamily protein, at 1,468,769 to 1,469,203 _1394 HP15_1395: HP15_1395 - heat shock protein 90, at 1,469,452 to 1,471,344 _1395 HP15_1396: HP15_1396 - conserved hypothetical protein, at 1,471,351 to 1,471,569 _1396 HP15_1397: HP15_1397 - peroxidase/catalase HPI, at 1,471,884 to 1,474,106 _1397 Position (kb) 1469 1470 1471 1472Strain fitness (log2 ratio) -2 -1 0 1 2at 1468.477 kb on + strand, within HP15_1393at 1468.497 kb on + strand, within HP15_1393at 1468.566 kb on + strand, within HP15_1393at 1468.607 kb on - strand, within HP15_1393at 1468.759 kb on - strandat 1468.921 kb on + strand, within HP15_1394at 1469.047 kb on + strand, within HP15_1394at 1469.310 kb on + strandat 1469.773 kb on - strand, within HP15_1395at 1469.826 kb on + strand, within HP15_1395at 1469.914 kb on - strand, within HP15_1395at 1469.998 kb on - strand, within HP15_1395at 1470.109 kb on + strand, within HP15_1395at 1470.151 kb on - strand, within HP15_1395at 1470.161 kb on - strand, within HP15_1395at 1470.185 kb on - strand, within HP15_1395at 1470.245 kb on + strand, within HP15_1395at 1470.281 kb on - strand, within HP15_1395at 1470.324 kb on - strand, within HP15_1395at 1470.393 kb on + strand, within HP15_1395at 1470.608 kb on - strand, within HP15_1395at 1470.826 kb on - strand, within HP15_1395at 1470.904 kb on - strand, within HP15_1395at 1470.917 kb on + strand, within HP15_1395at 1470.979 kb on + strand, within HP15_1395at 1471.254 kb on - strandat 1471.256 kb on + strandat 1471.382 kb on + strand, within HP15_1396at 1471.390 kb on - strand, within HP15_1396at 1471.390 kb on - strand, within HP15_1396at 1471.410 kb on + strand, within HP15_1396at 1471.423 kb on + strand, within HP15_1396at 1471.433 kb on - strand, within HP15_1396at 1471.446 kb on - strand, within HP15_1396at 1471.563 kb on + strandat 1471.571 kb on - strandat 1471.669 kb on - strandat 1471.684 kb on - strandat 1471.693 kb on + strandat 1471.884 kb on - strandat 1471.891 kb on + strandat 1471.949 kb on - strandat 1472.052 kb on - strandat 1472.311 kb on - strand, within HP15_1397

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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1,468,477 + HP15_1393 0.37 -1.7
1,468,497 + HP15_1393 0.41 +0.5
1,468,566 + HP15_1393 0.56 -1.1
1,468,607 - HP15_1393 0.65 -1.1
1,468,759 - -0.3
1,468,921 + HP15_1394 0.35 +0.1
1,469,047 + HP15_1394 0.64 -0.4
1,469,310 + -0.3
1,469,773 - HP15_1395 0.17 +2.5
1,469,826 + HP15_1395 0.20 +0.2
1,469,914 - HP15_1395 0.24 +0.6
1,469,998 - HP15_1395 0.29 +0.6
1,470,109 + HP15_1395 0.35 +0.1
1,470,151 - HP15_1395 0.37 +0.3
1,470,161 - HP15_1395 0.37 +1.1
1,470,185 - HP15_1395 0.39 +0.8
1,470,245 + HP15_1395 0.42 +1.0
1,470,281 - HP15_1395 0.44 +0.4
1,470,324 - HP15_1395 0.46 +0.6
1,470,393 + HP15_1395 0.50 -2.6
1,470,608 - HP15_1395 0.61 +0.7
1,470,826 - HP15_1395 0.73 +0.5
1,470,904 - HP15_1395 0.77 -1.3
1,470,917 + HP15_1395 0.77 -1.6
1,470,979 + HP15_1395 0.81 -1.1
1,471,254 - +0.2
1,471,256 + -0.1
1,471,382 + HP15_1396 0.14 -0.6
1,471,390 - HP15_1396 0.18 -0.9
1,471,390 - HP15_1396 0.18 -0.6
1,471,410 + HP15_1396 0.27 +1.0
1,471,423 + HP15_1396 0.33 +0.3
1,471,433 - HP15_1396 0.37 +0.8
1,471,446 - HP15_1396 0.43 -1.9
1,471,563 + -1.5
1,471,571 - +0.0
1,471,669 - -0.2
1,471,684 - +0.5
1,471,693 + -0.6
1,471,884 - -0.6
1,471,891 + -0.4
1,471,949 - -0.8
1,472,052 - -1.3
1,472,311 - HP15_1397 0.19 +1.5

Or see this region's nucleotide sequence