Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1390 and HP15_1391 are separated by 13 nucleotides HP15_1391 and HP15_1392 are separated by 47 nucleotides HP15_1392 and HP15_1393 are separated by 18 nucleotides
HP15_1390: HP15_1390 - peptidase M48, Ste24p, at 1,466,067 to 1,467,344
_1390
HP15_1391: HP15_1391 - hypothetical protein, at 1,467,358 to 1,467,495
_1391
HP15_1392: HP15_1392 - membrane protein containing DUF599, at 1,467,543 to 1,468,283
_1392
HP15_1393: HP15_1393 - thioesterase superfamily protein, at 1,468,302 to 1,468,772
_1393
Position (kb)
1467
1468 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1466.458 kb on + strand, within HP15_1390 at 1466.537 kb on - strand, within HP15_1390 at 1466.589 kb on + strand, within HP15_1390 at 1466.638 kb on + strand, within HP15_1390 at 1466.638 kb on + strand, within HP15_1390 at 1466.724 kb on + strand, within HP15_1390 at 1466.830 kb on + strand, within HP15_1390 at 1466.895 kb on + strand, within HP15_1390 at 1466.926 kb on - strand, within HP15_1390 at 1466.928 kb on + strand, within HP15_1390 at 1466.958 kb on + strand, within HP15_1390 at 1467.058 kb on + strand, within HP15_1390 at 1467.168 kb on - strand, within HP15_1390 at 1467.193 kb on + strand, within HP15_1390 at 1467.292 kb on + strand at 1467.381 kb on + strand, within HP15_1391 at 1467.381 kb on + strand, within HP15_1391 at 1467.600 kb on - strand at 1467.660 kb on - strand, within HP15_1392 at 1467.740 kb on + strand, within HP15_1392 at 1467.753 kb on + strand, within HP15_1392 at 1467.811 kb on + strand, within HP15_1392 at 1467.811 kb on - strand, within HP15_1392 at 1467.819 kb on - strand, within HP15_1392 at 1467.830 kb on + strand, within HP15_1392 at 1467.888 kb on + strand, within HP15_1392 at 1468.078 kb on - strand, within HP15_1392 at 1468.156 kb on + strand, within HP15_1392 at 1468.216 kb on + strand at 1468.290 kb on + strand at 1468.298 kb on - strand at 1468.347 kb on + strand at 1468.356 kb on - strand, within HP15_1393 at 1468.361 kb on - strand, within HP15_1393 at 1468.404 kb on + strand, within HP15_1393 at 1468.410 kb on - strand, within HP15_1393 at 1468.418 kb on + strand, within HP15_1393 at 1468.418 kb on + strand, within HP15_1393 at 1468.418 kb on + strand, within HP15_1393 at 1468.477 kb on + strand, within HP15_1393
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 1,466,458 + HP15_1390 0.31 +1.0 1,466,537 - HP15_1390 0.37 +1.8 1,466,589 + HP15_1390 0.41 -1.0 1,466,638 + HP15_1390 0.45 +0.1 1,466,638 + HP15_1390 0.45 -0.0 1,466,724 + HP15_1390 0.51 -0.4 1,466,830 + HP15_1390 0.60 +0.5 1,466,895 + HP15_1390 0.65 +0.6 1,466,926 - HP15_1390 0.67 +0.5 1,466,928 + HP15_1390 0.67 +0.1 1,466,958 + HP15_1390 0.70 -0.3 1,467,058 + HP15_1390 0.78 -0.4 1,467,168 - HP15_1390 0.86 -1.4 1,467,193 + HP15_1390 0.88 +0.5 1,467,292 + +1.0 1,467,381 + HP15_1391 0.17 -0.2 1,467,381 + HP15_1391 0.17 -0.4 1,467,600 - +0.5 1,467,660 - HP15_1392 0.16 +0.4 1,467,740 + HP15_1392 0.27 +0.5 1,467,753 + HP15_1392 0.28 +0.7 1,467,811 + HP15_1392 0.36 +1.6 1,467,811 - HP15_1392 0.36 -0.7 1,467,819 - HP15_1392 0.37 -0.8 1,467,830 + HP15_1392 0.39 +1.2 1,467,888 + HP15_1392 0.47 +0.9 1,468,078 - HP15_1392 0.72 +0.8 1,468,156 + HP15_1392 0.83 +1.1 1,468,216 + -1.1 1,468,290 + -0.9 1,468,298 - +2.0 1,468,347 + -1.0 1,468,356 - HP15_1393 0.11 -0.1 1,468,361 - HP15_1393 0.13 +2.0 1,468,404 + HP15_1393 0.22 +1.7 1,468,410 - HP15_1393 0.23 +0.7 1,468,418 + HP15_1393 0.25 -0.1 1,468,418 + HP15_1393 0.25 -3.4 1,468,418 + HP15_1393 0.25 -0.3 1,468,477 + HP15_1393 0.37 -1.7
Or see this region's nucleotide sequence