Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1305 and HP15_1306 are separated by 223 nucleotides HP15_1306 and HP15_1307 are separated by 69 nucleotides HP15_1307 and HP15_1308 are separated by 0 nucleotides
HP15_1305: HP15_1305 - nicotinate-nucleotide pyrophosphorylase, at 1,364,329 to 1,365,168
_1305
HP15_1306: HP15_1306 - protein containing DUF1631, at 1,365,392 to 1,367,689
_1306
HP15_1307: HP15_1307 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 1,367,759 to 1,368,385
_1307
HP15_1308: HP15_1308 - signaling modulator of AmpD, AmpE, at 1,368,386 to 1,368,901
_1308
Position (kb)
1365
1366
1367
1368 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1365.194 kb on - strand at 1365.246 kb on + strand at 1365.248 kb on - strand at 1365.278 kb on + strand at 1365.375 kb on - strand at 1365.395 kb on - strand at 1365.483 kb on + strand at 1365.488 kb on + strand at 1365.534 kb on + strand at 1365.552 kb on - strand at 1365.652 kb on - strand, within HP15_1306 at 1365.710 kb on - strand, within HP15_1306 at 1365.864 kb on + strand, within HP15_1306 at 1365.923 kb on + strand, within HP15_1306 at 1365.923 kb on + strand, within HP15_1306 at 1365.928 kb on + strand, within HP15_1306 at 1365.933 kb on + strand, within HP15_1306 at 1366.083 kb on + strand, within HP15_1306 at 1366.136 kb on - strand, within HP15_1306 at 1366.248 kb on - strand, within HP15_1306 at 1366.353 kb on + strand, within HP15_1306 at 1366.418 kb on - strand, within HP15_1306 at 1366.424 kb on - strand, within HP15_1306 at 1366.958 kb on - strand, within HP15_1306 at 1367.003 kb on - strand, within HP15_1306 at 1367.025 kb on - strand, within HP15_1306 at 1367.025 kb on - strand, within HP15_1306 at 1367.063 kb on + strand, within HP15_1306 at 1367.073 kb on + strand, within HP15_1306 at 1367.078 kb on + strand, within HP15_1306 at 1367.212 kb on - strand, within HP15_1306 at 1367.233 kb on - strand, within HP15_1306 at 1367.291 kb on - strand, within HP15_1306 at 1367.334 kb on + strand, within HP15_1306 at 1367.436 kb on + strand, within HP15_1306 at 1367.632 kb on - strand at 1367.702 kb on - strand at 1368.347 kb on + strand at 1368.438 kb on + strand, within HP15_1308 at 1368.463 kb on + strand, within HP15_1308 at 1368.471 kb on - strand, within HP15_1308 at 1368.504 kb on - strand, within HP15_1308
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 1,365,194 - -0.3 1,365,246 + -1.1 1,365,248 - -0.9 1,365,278 + +0.6 1,365,375 - +0.4 1,365,395 - +3.2 1,365,483 + +2.3 1,365,488 + -0.3 1,365,534 + +1.1 1,365,552 - -0.5 1,365,652 - HP15_1306 0.11 +0.5 1,365,710 - HP15_1306 0.14 +0.3 1,365,864 + HP15_1306 0.21 +0.7 1,365,923 + HP15_1306 0.23 +1.7 1,365,923 + HP15_1306 0.23 -0.5 1,365,928 + HP15_1306 0.23 -0.2 1,365,933 + HP15_1306 0.24 +1.9 1,366,083 + HP15_1306 0.30 +0.3 1,366,136 - HP15_1306 0.32 +0.8 1,366,248 - HP15_1306 0.37 +0.4 1,366,353 + HP15_1306 0.42 +0.6 1,366,418 - HP15_1306 0.45 +0.6 1,366,424 - HP15_1306 0.45 +0.4 1,366,958 - HP15_1306 0.68 -0.5 1,367,003 - HP15_1306 0.70 +1.4 1,367,025 - HP15_1306 0.71 +0.9 1,367,025 - HP15_1306 0.71 +1.1 1,367,063 + HP15_1306 0.73 +0.9 1,367,073 + HP15_1306 0.73 +0.8 1,367,078 + HP15_1306 0.73 +0.2 1,367,212 - HP15_1306 0.79 +0.7 1,367,233 - HP15_1306 0.80 -0.9 1,367,291 - HP15_1306 0.83 +1.0 1,367,334 + HP15_1306 0.85 +0.9 1,367,436 + HP15_1306 0.89 +1.3 1,367,632 - +0.1 1,367,702 - +0.5 1,368,347 + -0.6 1,368,438 + HP15_1308 0.10 -2.1 1,368,463 + HP15_1308 0.15 -0.5 1,368,471 - HP15_1308 0.16 -2.8 1,368,504 - HP15_1308 0.23 -0.1
Or see this region's nucleotide sequence