Strain Fitness in Marinobacter adhaerens HP15 around HP15_1301

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1300 and HP15_1301 are separated by 27 nucleotidesHP15_1301 and HP15_1302 overlap by 4 nucleotidesHP15_1302 and HP15_1303 are separated by 69 nucleotides HP15_1300: HP15_1300 - conserved hypothetical protein, at 1,360,745 to 1,361,845 _1300 HP15_1301: HP15_1301 - phosphatidylglycerophosphate synthase, at 1,361,873 to 1,362,427 _1301 HP15_1302: HP15_1302 - DNA replication initiation factor, at 1,362,424 to 1,363,122 _1302 HP15_1303: HP15_1303 - chromosome partitioning protein, ParA family, at 1,363,192 to 1,363,980 _1303 Position (kb) 1361 1362 1363Strain fitness (log2 ratio) -2 -1 0 1 2at 1361.703 kb on + strand, within HP15_1300at 1361.703 kb on + strand, within HP15_1300at 1362.202 kb on + strand, within HP15_1301at 1362.202 kb on + strand, within HP15_1301at 1362.316 kb on + strand, within HP15_1301at 1362.321 kb on + strand, within HP15_1301at 1363.165 kb on + strandat 1363.173 kb on - strandat 1363.232 kb on - strandat 1363.232 kb on - strandat 1363.289 kb on - strand, within HP15_1303at 1363.361 kb on - strand, within HP15_1303at 1363.393 kb on + strand, within HP15_1303

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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1,361,703 + HP15_1300 0.87 -0.1
1,361,703 + HP15_1300 0.87 +2.7
1,362,202 + HP15_1301 0.59 +0.2
1,362,202 + HP15_1301 0.59 -0.5
1,362,316 + HP15_1301 0.80 -2.6
1,362,321 + HP15_1301 0.81 -0.9
1,363,165 + +1.6
1,363,173 - -1.3
1,363,232 - +0.4
1,363,232 - +1.0
1,363,289 - HP15_1303 0.12 +1.8
1,363,361 - HP15_1303 0.21 +0.8
1,363,393 + HP15_1303 0.25 +1.2

Or see this region's nucleotide sequence