Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1184 and HP15_1185 overlap by 8 nucleotides HP15_1185 and HP15_1186 are separated by 111 nucleotides
HP15_1184: HP15_1184 - peptidoglycan-binding LysM, at 1,217,194 to 1,218,831
_1184
HP15_1185: HP15_1185 - two component transcriptional regulator, winged helix family, at 1,218,824 to 1,219,558
_1185
HP15_1186: HP15_1186 - DNA topoisomerase III, at 1,219,670 to 1,221,853
_1186
Position (kb)
1218
1219
1220 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1217.828 kb on - strand, within HP15_1184 at 1218.008 kb on + strand, within HP15_1184 at 1218.248 kb on + strand, within HP15_1184 at 1218.380 kb on - strand, within HP15_1184 at 1218.485 kb on - strand, within HP15_1184 at 1218.523 kb on - strand, within HP15_1184 at 1218.523 kb on - strand, within HP15_1184 at 1218.653 kb on - strand, within HP15_1184 at 1218.682 kb on - strand at 1218.780 kb on - strand at 1218.835 kb on - strand at 1219.129 kb on + strand, within HP15_1185 at 1219.149 kb on - strand, within HP15_1185 at 1219.215 kb on + strand, within HP15_1185 at 1219.221 kb on - strand, within HP15_1185 at 1219.269 kb on - strand, within HP15_1185 at 1219.310 kb on + strand, within HP15_1185 at 1219.310 kb on + strand, within HP15_1185 at 1219.555 kb on + strand at 1219.566 kb on + strand at 1219.566 kb on + strand at 1219.623 kb on + strand at 1219.699 kb on - strand at 1219.830 kb on + strand at 1220.014 kb on + strand, within HP15_1186 at 1220.020 kb on - strand, within HP15_1186 at 1220.058 kb on + strand, within HP15_1186 at 1220.128 kb on + strand, within HP15_1186 at 1220.157 kb on + strand, within HP15_1186 at 1220.157 kb on + strand, within HP15_1186 at 1220.162 kb on + strand, within HP15_1186 at 1220.165 kb on - strand, within HP15_1186 at 1220.212 kb on - strand, within HP15_1186 at 1220.223 kb on + strand, within HP15_1186 at 1220.392 kb on + strand, within HP15_1186
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 1,217,828 - HP15_1184 0.39 +0.5 1,218,008 + HP15_1184 0.50 -1.0 1,218,248 + HP15_1184 0.64 +1.4 1,218,380 - HP15_1184 0.72 +0.8 1,218,485 - HP15_1184 0.79 +0.8 1,218,523 - HP15_1184 0.81 +0.3 1,218,523 - HP15_1184 0.81 +0.8 1,218,653 - HP15_1184 0.89 +0.7 1,218,682 - +4.1 1,218,780 - +1.7 1,218,835 - +1.4 1,219,129 + HP15_1185 0.41 +1.3 1,219,149 - HP15_1185 0.44 +0.3 1,219,215 + HP15_1185 0.53 +1.4 1,219,221 - HP15_1185 0.54 +0.9 1,219,269 - HP15_1185 0.61 +1.3 1,219,310 + HP15_1185 0.66 +1.0 1,219,310 + HP15_1185 0.66 +1.4 1,219,555 + -0.2 1,219,566 + -0.4 1,219,566 + +0.5 1,219,623 + +3.9 1,219,699 - +2.3 1,219,830 + +1.1 1,220,014 + HP15_1186 0.16 +1.5 1,220,020 - HP15_1186 0.16 -0.2 1,220,058 + HP15_1186 0.18 +2.4 1,220,128 + HP15_1186 0.21 -0.1 1,220,157 + HP15_1186 0.22 +1.0 1,220,157 + HP15_1186 0.22 +0.6 1,220,162 + HP15_1186 0.23 +0.3 1,220,165 - HP15_1186 0.23 +1.1 1,220,212 - HP15_1186 0.25 +0.4 1,220,223 + HP15_1186 0.25 +0.6 1,220,392 + HP15_1186 0.33 -0.2
Or see this region's nucleotide sequence