Strain Fitness in Marinobacter adhaerens HP15 around HP15_1148

Experiment: monoculture; Experiment A, time point 7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1147 and HP15_1148 overlap by 4 nucleotidesHP15_1148 and HP15_1149 are separated by 57 nucleotides HP15_1147: HP15_1147 - glycosyltransferase involved in cell wall biogenesis, at 1,180,914 to 1,182,137 _1147 HP15_1148: HP15_1148 - alpha amylase, catalytic region, at 1,182,134 to 1,183,873 _1148 HP15_1149: HP15_1149 - quinone oxidoreductase putative, PIG3, at 1,183,931 to 1,184,923 _1149 Position (kb) 1182 1183 1184Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1181.135 kb on - strand, within HP15_1147at 1181.194 kb on + strand, within HP15_1147at 1181.194 kb on + strand, within HP15_1147at 1181.195 kb on + strand, within HP15_1147at 1181.324 kb on - strand, within HP15_1147at 1181.385 kb on + strand, within HP15_1147at 1181.399 kb on + strand, within HP15_1147at 1181.399 kb on + strand, within HP15_1147at 1181.500 kb on + strand, within HP15_1147at 1181.577 kb on - strand, within HP15_1147at 1181.610 kb on + strand, within HP15_1147at 1181.618 kb on - strand, within HP15_1147at 1181.818 kb on - strand, within HP15_1147at 1181.864 kb on + strand, within HP15_1147at 1182.188 kb on + strandat 1182.544 kb on + strand, within HP15_1148at 1182.588 kb on + strand, within HP15_1148at 1182.605 kb on + strand, within HP15_1148at 1182.673 kb on + strand, within HP15_1148at 1182.673 kb on + strand, within HP15_1148at 1182.681 kb on - strand, within HP15_1148at 1182.681 kb on - strand, within HP15_1148at 1182.683 kb on + strand, within HP15_1148at 1182.686 kb on - strand, within HP15_1148at 1182.730 kb on + strand, within HP15_1148at 1182.826 kb on + strand, within HP15_1148at 1182.888 kb on + strand, within HP15_1148at 1182.896 kb on - strand, within HP15_1148at 1182.896 kb on - strand, within HP15_1148at 1182.906 kb on - strand, within HP15_1148at 1183.081 kb on + strand, within HP15_1148at 1183.150 kb on + strand, within HP15_1148at 1183.298 kb on + strand, within HP15_1148at 1183.385 kb on - strand, within HP15_1148at 1183.422 kb on + strand, within HP15_1148at 1183.485 kb on + strand, within HP15_1148at 1183.532 kb on + strand, within HP15_1148at 1183.537 kb on - strand, within HP15_1148at 1183.546 kb on + strand, within HP15_1148at 1183.578 kb on + strand, within HP15_1148at 1183.629 kb on + strand, within HP15_1148at 1183.758 kb on + strandat 1183.821 kb on + strandat 1183.821 kb on + strandat 1183.829 kb on - strandat 1183.830 kb on - strandat 1183.847 kb on - strandat 1183.956 kb on - strandat 1184.068 kb on - strand, within HP15_1149at 1184.068 kb on - strand, within HP15_1149at 1184.154 kb on - strand, within HP15_1149at 1184.174 kb on - strand, within HP15_1149at 1184.182 kb on + strand, within HP15_1149at 1184.552 kb on + strand, within HP15_1149at 1184.570 kb on - strand, within HP15_1149at 1184.592 kb on - strand, within HP15_1149at 1184.642 kb on - strand, within HP15_1149at 1184.793 kb on - strand, within HP15_1149at 1184.793 kb on - strand, within HP15_1149at 1184.851 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
remove
1,181,135 - HP15_1147 0.18 -1.9
1,181,194 + HP15_1147 0.23 -1.0
1,181,194 + HP15_1147 0.23 -4.6
1,181,195 + HP15_1147 0.23 -3.3
1,181,324 - HP15_1147 0.33 -3.7
1,181,385 + HP15_1147 0.38 -2.2
1,181,399 + HP15_1147 0.40 -0.9
1,181,399 + HP15_1147 0.40 -1.6
1,181,500 + HP15_1147 0.48 -4.4
1,181,577 - HP15_1147 0.54 -2.5
1,181,610 + HP15_1147 0.57 -3.1
1,181,618 - HP15_1147 0.58 +0.6
1,181,818 - HP15_1147 0.74 -3.5
1,181,864 + HP15_1147 0.78 -1.7
1,182,188 + +0.2
1,182,544 + HP15_1148 0.24 +1.1
1,182,588 + HP15_1148 0.26 -0.2
1,182,605 + HP15_1148 0.27 -0.8
1,182,673 + HP15_1148 0.31 +1.1
1,182,673 + HP15_1148 0.31 +0.7
1,182,681 - HP15_1148 0.31 +1.2
1,182,681 - HP15_1148 0.31 -0.1
1,182,683 + HP15_1148 0.32 -1.3
1,182,686 - HP15_1148 0.32 +1.6
1,182,730 + HP15_1148 0.34 +3.1
1,182,826 + HP15_1148 0.40 +1.3
1,182,888 + HP15_1148 0.43 +0.5
1,182,896 - HP15_1148 0.44 +1.0
1,182,896 - HP15_1148 0.44 +1.2
1,182,906 - HP15_1148 0.44 +3.1
1,183,081 + HP15_1148 0.54 +0.8
1,183,150 + HP15_1148 0.58 +1.1
1,183,298 + HP15_1148 0.67 +0.9
1,183,385 - HP15_1148 0.72 +0.8
1,183,422 + HP15_1148 0.74 +0.9
1,183,485 + HP15_1148 0.78 +2.1
1,183,532 + HP15_1148 0.80 +1.0
1,183,537 - HP15_1148 0.81 -0.3
1,183,546 + HP15_1148 0.81 +1.1
1,183,578 + HP15_1148 0.83 +0.9
1,183,629 + HP15_1148 0.86 +1.3
1,183,758 + +1.5
1,183,821 + -0.0
1,183,821 + +0.4
1,183,829 - +1.5
1,183,830 - +0.1
1,183,847 - +0.1
1,183,956 - -0.3
1,184,068 - HP15_1149 0.14 +0.3
1,184,068 - HP15_1149 0.14 -0.6
1,184,154 - HP15_1149 0.22 -0.3
1,184,174 - HP15_1149 0.24 -1.0
1,184,182 + HP15_1149 0.25 -1.7
1,184,552 + HP15_1149 0.63 -1.4
1,184,570 - HP15_1149 0.64 +0.5
1,184,592 - HP15_1149 0.67 +1.3
1,184,642 - HP15_1149 0.72 -0.6
1,184,793 - HP15_1149 0.87 -0.2
1,184,793 - HP15_1149 0.87 +0.9
1,184,851 + +0.2

Or see this region's nucleotide sequence