Strain Fitness in Marinobacter adhaerens HP15 around HP15_1020

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1019 and HP15_1020 overlap by 4 nucleotidesHP15_1020 and HP15_1021 are separated by 154 nucleotidesHP15_1021 and HP15_1022 overlap by 16 nucleotides HP15_1019: HP15_1019 - multidrug resistance protein, at 1,032,366 to 1,035,449 _1019 HP15_1020: HP15_1020 - methyl-accepting chemotaxis sensory transducer, at 1,035,446 to 1,037,071 _1020 HP15_1021: HP15_1021 - tRNA pseudouridine synthase C, at 1,037,226 to 1,037,969 _1021 HP15_1022: HP15_1022 - sensory box protein/GGDEF domain protein, at 1,037,954 to 1,039,810 _1022 Position (kb) 1035 1036 1037 1038Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1034.644 kb on - strand, within HP15_1019at 1034.716 kb on - strand, within HP15_1019at 1034.966 kb on - strand, within HP15_1019at 1034.998 kb on - strand, within HP15_1019at 1035.085 kb on - strand, within HP15_1019at 1035.150 kb on - strandat 1035.274 kb on + strandat 1035.274 kb on + strandat 1035.282 kb on - strandat 1035.310 kb on - strandat 1035.312 kb on + strandat 1035.325 kb on - strandat 1035.325 kb on - strandat 1035.444 kb on + strandat 1035.494 kb on - strandat 1035.544 kb on - strandat 1035.544 kb on - strandat 1035.607 kb on - strandat 1035.724 kb on + strand, within HP15_1020at 1035.857 kb on + strand, within HP15_1020at 1035.913 kb on + strand, within HP15_1020at 1035.925 kb on - strand, within HP15_1020at 1036.094 kb on - strand, within HP15_1020at 1036.094 kb on - strand, within HP15_1020at 1036.096 kb on + strand, within HP15_1020at 1036.203 kb on - strand, within HP15_1020at 1036.426 kb on + strand, within HP15_1020at 1036.432 kb on + strand, within HP15_1020at 1036.435 kb on - strand, within HP15_1020at 1036.536 kb on + strand, within HP15_1020at 1036.613 kb on + strand, within HP15_1020at 1036.621 kb on - strand, within HP15_1020at 1036.783 kb on + strand, within HP15_1020at 1036.809 kb on - strand, within HP15_1020at 1036.845 kb on - strand, within HP15_1020at 1036.850 kb on + strand, within HP15_1020at 1036.881 kb on + strand, within HP15_1020at 1037.214 kb on - strandat 1037.224 kb on - strandat 1037.264 kb on + strandat 1037.264 kb on + strandat 1037.264 kb on + strandat 1037.276 kb on + strandat 1037.383 kb on - strand, within HP15_1021at 1037.554 kb on + strand, within HP15_1021at 1037.603 kb on - strand, within HP15_1021at 1037.748 kb on - strand, within HP15_1021at 1037.834 kb on + strand, within HP15_1021at 1037.911 kb on + strandat 1037.980 kb on + strandat 1037.988 kb on - strandat 1037.988 kb on - strandat 1038.016 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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1,034,644 - HP15_1019 0.74 -0.3
1,034,716 - HP15_1019 0.76 +0.7
1,034,966 - HP15_1019 0.84 +0.5
1,034,998 - HP15_1019 0.85 +0.6
1,035,085 - HP15_1019 0.88 -1.5
1,035,150 - +0.3
1,035,274 + +0.1
1,035,274 + -0.9
1,035,282 - +0.0
1,035,310 - -0.4
1,035,312 + +0.7
1,035,325 - -2.1
1,035,325 - -0.6
1,035,444 + -0.2
1,035,494 - +1.7
1,035,544 - -0.2
1,035,544 - -0.1
1,035,607 - +0.5
1,035,724 + HP15_1020 0.17 +0.6
1,035,857 + HP15_1020 0.25 +0.4
1,035,913 + HP15_1020 0.29 +1.0
1,035,925 - HP15_1020 0.29 +0.0
1,036,094 - HP15_1020 0.40 +0.7
1,036,094 - HP15_1020 0.40 +0.9
1,036,096 + HP15_1020 0.40 +0.2
1,036,203 - HP15_1020 0.47 -1.4
1,036,426 + HP15_1020 0.60 +1.2
1,036,432 + HP15_1020 0.61 +2.9
1,036,435 - HP15_1020 0.61 +1.1
1,036,536 + HP15_1020 0.67 +0.6
1,036,613 + HP15_1020 0.72 +0.2
1,036,621 - HP15_1020 0.72 +0.4
1,036,783 + HP15_1020 0.82 +2.5
1,036,809 - HP15_1020 0.84 +1.7
1,036,845 - HP15_1020 0.86 +1.9
1,036,850 + HP15_1020 0.86 -0.1
1,036,881 + HP15_1020 0.88 +1.1
1,037,214 - +1.7
1,037,224 - -0.3
1,037,264 + +0.5
1,037,264 + -1.3
1,037,264 + -0.6
1,037,276 + -2.9
1,037,383 - HP15_1021 0.21 -1.1
1,037,554 + HP15_1021 0.44 -0.9
1,037,603 - HP15_1021 0.51 -0.4
1,037,748 - HP15_1021 0.70 -0.1
1,037,834 + HP15_1021 0.82 +1.2
1,037,911 + +1.2
1,037,980 + -2.7
1,037,988 - +0.1
1,037,988 - +0.3
1,038,016 + -0.9

Or see this region's nucleotide sequence