Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27425

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27420 and AZOBR_RS27425 are separated by 218 nucleotidesAZOBR_RS27425 and AZOBR_RS27430 are separated by 74 nucleotides AZOBR_RS27420: AZOBR_RS27420 - hypothetical protein, at 302,797 to 303,495 _RS27420 AZOBR_RS27425: AZOBR_RS27425 - hypothetical protein, at 303,714 to 304,082 _RS27425 AZOBR_RS27430: AZOBR_RS27430 - putative ABC transporter substrate-binding periplasmic protein, at 304,157 to 305,158 _RS27430 Position (kb) 303 304 305Strain fitness (log2 ratio) -1 0 1at 302.796 kb on + strandat 302.796 kb on + strandat 302.797 kb on - strandat 302.797 kb on - strandat 302.797 kb on - strandat 303.769 kb on - strand, within AZOBR_RS27425at 304.061 kb on + strandat 304.062 kb on - strandat 304.440 kb on - strand, within AZOBR_RS27430at 304.440 kb on - strand, within AZOBR_RS27430

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
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302,796 + +1.0
302,796 + -0.7
302,797 - +0.1
302,797 - -0.1
302,797 - -1.2
303,769 - AZOBR_RS27425 0.15 -1.5
304,061 + -0.9
304,062 - +0.5
304,440 - AZOBR_RS27430 0.28 +0.1
304,440 - AZOBR_RS27430 0.28 +0.5

Or see this region's nucleotide sequence