Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26590

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26585 and AZOBR_RS26590 are separated by 121 nucleotidesAZOBR_RS26590 and AZOBR_RS26595 are separated by 110 nucleotides AZOBR_RS26585: AZOBR_RS26585 - AraC family transcriptional regulator, at 108,753 to 109,709 _RS26585 AZOBR_RS26590: AZOBR_RS26590 - AraC family transcriptional regulator, at 109,831 to 110,640 _RS26590 AZOBR_RS26595: AZOBR_RS26595 - membrane protein, at 110,751 to 112,298 _RS26595 Position (kb) 109 110 111Strain fitness (log2 ratio) -1 0 1at 109.073 kb on - strand, within AZOBR_RS26585at 109.159 kb on + strand, within AZOBR_RS26585at 109.159 kb on + strand, within AZOBR_RS26585at 109.159 kb on + strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.609 kb on + strand, within AZOBR_RS26585at 109.609 kb on + strand, within AZOBR_RS26585at 109.609 kb on + strand, within AZOBR_RS26585at 109.609 kb on + strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.688 kb on - strandat 109.688 kb on - strandat 109.774 kb on + strandat 109.775 kb on - strandat 109.775 kb on - strandat 109.775 kb on - strandat 109.775 kb on - strandat 109.775 kb on - strandat 109.775 kb on - strandat 109.895 kb on - strandat 110.197 kb on + strand, within AZOBR_RS26590at 110.198 kb on - strand, within AZOBR_RS26590at 110.294 kb on - strand, within AZOBR_RS26590at 110.554 kb on + strand, within AZOBR_RS26590at 110.555 kb on - strand, within AZOBR_RS26590at 111.226 kb on + strand, within AZOBR_RS26595at 111.226 kb on + strand, within AZOBR_RS26595at 111.227 kb on - strand, within AZOBR_RS26595at 111.227 kb on - strand, within AZOBR_RS26595at 111.407 kb on + strand, within AZOBR_RS26595at 111.408 kb on - strand, within AZOBR_RS26595

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
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109,073 - AZOBR_RS26585 0.33 -0.2
109,159 + AZOBR_RS26585 0.42 -0.3
109,159 + AZOBR_RS26585 0.42 +0.4
109,159 + AZOBR_RS26585 0.42 -0.0
109,160 - AZOBR_RS26585 0.43 -0.7
109,160 - AZOBR_RS26585 0.43 -0.2
109,160 - AZOBR_RS26585 0.43 -0.0
109,160 - AZOBR_RS26585 0.43 +0.6
109,160 - AZOBR_RS26585 0.43 -0.2
109,160 - AZOBR_RS26585 0.43 +0.2
109,160 - AZOBR_RS26585 0.43 -0.3
109,609 + AZOBR_RS26585 0.89 -0.4
109,609 + AZOBR_RS26585 0.89 +0.8
109,609 + AZOBR_RS26585 0.89 +0.2
109,609 + AZOBR_RS26585 0.89 +0.5
109,610 - AZOBR_RS26585 0.90 -0.0
109,610 - AZOBR_RS26585 0.90 -0.3
109,610 - AZOBR_RS26585 0.90 -0.8
109,610 - AZOBR_RS26585 0.90 -0.2
109,610 - AZOBR_RS26585 0.90 +1.6
109,610 - AZOBR_RS26585 0.90 +0.3
109,610 - AZOBR_RS26585 0.90 +0.6
109,688 - -0.4
109,688 - +0.1
109,774 + -0.8
109,775 - -0.8
109,775 - +0.1
109,775 - -0.9
109,775 - +0.3
109,775 - -0.7
109,775 - -0.4
109,895 - +0.1
110,197 + AZOBR_RS26590 0.45 +0.9
110,198 - AZOBR_RS26590 0.45 -0.2
110,294 - AZOBR_RS26590 0.57 -0.1
110,554 + AZOBR_RS26590 0.89 +0.8
110,555 - AZOBR_RS26590 0.89 -0.4
111,226 + AZOBR_RS26595 0.31 +0.8
111,226 + AZOBR_RS26595 0.31 +1.4
111,227 - AZOBR_RS26595 0.31 -0.0
111,227 - AZOBR_RS26595 0.31 -0.3
111,407 + AZOBR_RS26595 0.42 -0.3
111,408 - AZOBR_RS26595 0.42 +0.4

Or see this region's nucleotide sequence