Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18520

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18515 and AZOBR_RS18520 are separated by 40 nucleotidesAZOBR_RS18520 and AZOBR_RS18525 are separated by 40 nucleotidesAZOBR_RS18525 and AZOBR_RS18530 are separated by 52 nucleotides AZOBR_RS18515: AZOBR_RS18515 - chromosome partitioning protein, at 924,253 to 925,005 _RS18515 AZOBR_RS18520: AZOBR_RS18520 - chromosome partitioning protein, at 925,046 to 925,927 _RS18520 AZOBR_RS18525: AZOBR_RS18525 - uracil-DNA glycosylase, at 925,968 to 926,504 _RS18525 AZOBR_RS18530: AZOBR_RS18530 - hypothetical protein, at 926,557 to 927,273 _RS18530 Position (kb) 925 926Strain fitness (log2 ratio) -1 0 1at 926.153 kb on - strand, within AZOBR_RS18525at 926.153 kb on - strand, within AZOBR_RS18525at 926.398 kb on + strand, within AZOBR_RS18525at 926.399 kb on - strand, within AZOBR_RS18525at 926.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
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926,153 - AZOBR_RS18525 0.34 -0.2
926,153 - AZOBR_RS18525 0.34 -0.2
926,398 + AZOBR_RS18525 0.80 -0.1
926,399 - AZOBR_RS18525 0.80 +0.4
926,558 + -0.5

Or see this region's nucleotide sequence