Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06890

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06885 and AZOBR_RS06890 are separated by 7 nucleotidesAZOBR_RS06890 and AZOBR_RS06895 are separated by 84 nucleotides AZOBR_RS06885: AZOBR_RS06885 - ATPase AAA, at 1,458,497 to 1,459,834 _RS06885 AZOBR_RS06890: AZOBR_RS06890 - conserved exported protein of unknown function, at 1,459,842 to 1,460,318 _RS06890 AZOBR_RS06895: AZOBR_RS06895 - hypothetical protein, at 1,460,403 to 1,461,275 _RS06895 Position (kb) 1459 1460 1461Strain fitness (log2 ratio) -1 0 1 2at 1458.900 kb on - strand, within AZOBR_RS06885at 1458.900 kb on - strand, within AZOBR_RS06885at 1458.900 kb on - strand, within AZOBR_RS06885at 1458.900 kb on - strand, within AZOBR_RS06885at 1458.900 kb on - strand, within AZOBR_RS06885at 1459.235 kb on + strand, within AZOBR_RS06885at 1459.259 kb on + strand, within AZOBR_RS06885at 1459.259 kb on + strand, within AZOBR_RS06885at 1459.259 kb on + strand, within AZOBR_RS06885at 1459.260 kb on - strand, within AZOBR_RS06885at 1459.260 kb on - strand, within AZOBR_RS06885at 1459.319 kb on + strand, within AZOBR_RS06885at 1459.326 kb on - strand, within AZOBR_RS06885at 1459.361 kb on + strand, within AZOBR_RS06885at 1459.361 kb on + strand, within AZOBR_RS06885at 1459.362 kb on - strand, within AZOBR_RS06885at 1459.454 kb on + strand, within AZOBR_RS06885at 1459.455 kb on - strand, within AZOBR_RS06885at 1459.509 kb on - strand, within AZOBR_RS06885at 1459.509 kb on - strand, within AZOBR_RS06885at 1459.550 kb on + strand, within AZOBR_RS06885at 1459.551 kb on - strand, within AZOBR_RS06885at 1459.658 kb on + strand, within AZOBR_RS06885at 1459.703 kb on + strandat 1459.704 kb on - strandat 1459.704 kb on - strandat 1459.736 kb on + strandat 1459.736 kb on + strandat 1459.787 kb on + strandat 1459.912 kb on + strand, within AZOBR_RS06890at 1459.912 kb on + strand, within AZOBR_RS06890at 1459.912 kb on + strand, within AZOBR_RS06890at 1459.913 kb on - strand, within AZOBR_RS06890at 1459.913 kb on - strand, within AZOBR_RS06890at 1459.913 kb on - strand, within AZOBR_RS06890at 1459.913 kb on - strand, within AZOBR_RS06890at 1459.913 kb on - strand, within AZOBR_RS06890at 1459.913 kb on - strand, within AZOBR_RS06890at 1459.913 kb on - strand, within AZOBR_RS06890at 1459.913 kb on - strand, within AZOBR_RS06890at 1459.913 kb on - strand, within AZOBR_RS06890at 1460.017 kb on + strand, within AZOBR_RS06890at 1460.324 kb on + strandat 1460.325 kb on - strandat 1460.325 kb on - strandat 1460.479 kb on - strandat 1460.880 kb on + strand, within AZOBR_RS06895at 1461.027 kb on + strand, within AZOBR_RS06895

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
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1,458,900 - AZOBR_RS06885 0.30 -0.4
1,458,900 - AZOBR_RS06885 0.30 -0.2
1,458,900 - AZOBR_RS06885 0.30 -0.1
1,458,900 - AZOBR_RS06885 0.30 +0.2
1,458,900 - AZOBR_RS06885 0.30 -0.0
1,459,235 + AZOBR_RS06885 0.55 -0.9
1,459,259 + AZOBR_RS06885 0.57 +0.9
1,459,259 + AZOBR_RS06885 0.57 -0.2
1,459,259 + AZOBR_RS06885 0.57 -0.7
1,459,260 - AZOBR_RS06885 0.57 +0.2
1,459,260 - AZOBR_RS06885 0.57 +0.0
1,459,319 + AZOBR_RS06885 0.61 -0.2
1,459,326 - AZOBR_RS06885 0.62 -0.0
1,459,361 + AZOBR_RS06885 0.65 +0.3
1,459,361 + AZOBR_RS06885 0.65 +0.8
1,459,362 - AZOBR_RS06885 0.65 -0.4
1,459,454 + AZOBR_RS06885 0.72 -0.5
1,459,455 - AZOBR_RS06885 0.72 -1.1
1,459,509 - AZOBR_RS06885 0.76 -0.2
1,459,509 - AZOBR_RS06885 0.76 +0.4
1,459,550 + AZOBR_RS06885 0.79 +0.2
1,459,551 - AZOBR_RS06885 0.79 +0.5
1,459,658 + AZOBR_RS06885 0.87 +0.4
1,459,703 + -0.9
1,459,704 - -0.7
1,459,704 - -0.2
1,459,736 + -0.9
1,459,736 + -0.0
1,459,787 + -1.2
1,459,912 + AZOBR_RS06890 0.15 +0.9
1,459,912 + AZOBR_RS06890 0.15 +0.0
1,459,912 + AZOBR_RS06890 0.15 +0.1
1,459,913 - AZOBR_RS06890 0.15 -0.9
1,459,913 - AZOBR_RS06890 0.15 +1.4
1,459,913 - AZOBR_RS06890 0.15 +0.1
1,459,913 - AZOBR_RS06890 0.15 +0.0
1,459,913 - AZOBR_RS06890 0.15 +0.7
1,459,913 - AZOBR_RS06890 0.15 +0.4
1,459,913 - AZOBR_RS06890 0.15 +1.9
1,459,913 - AZOBR_RS06890 0.15 -0.7
1,459,913 - AZOBR_RS06890 0.15 +0.4
1,460,017 + AZOBR_RS06890 0.37 +0.0
1,460,324 + -0.0
1,460,325 - +1.3
1,460,325 - +0.0
1,460,479 - -0.5
1,460,880 + AZOBR_RS06895 0.55 -0.8
1,461,027 + AZOBR_RS06895 0.71 -0.3

Or see this region's nucleotide sequence