Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_771 and HP15_772 are separated by 21 nucleotides HP15_772 and HP15_773 overlap by 17 nucleotides HP15_773 and HP15_774 are separated by 39 nucleotides
HP15_771: HP15_771 - glycine cleavage T-protein (aminomethyl transferase), at 782,092 to 783,087
_771
HP15_772: HP15_772 - conserved hypothetical protein, secreted, at 783,109 to 783,573
_772
HP15_773: HP15_773 - conserved hypothetical protein, at 783,557 to 783,829
_773
HP15_774: HP15_774 - L-aspartate oxidase, at 783,869 to 785,494
_774
Position (kb) 783
784 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 782.567 kb on - strand, within HP15_771 at 782.651 kb on + strand, within HP15_771 at 782.868 kb on - strand, within HP15_771 at 783.138 kb on + strand at 783.306 kb on + strand, within HP15_772 at 783.306 kb on + strand, within HP15_772 at 783.314 kb on - strand, within HP15_772 at 783.382 kb on + strand, within HP15_772 at 783.390 kb on - strand, within HP15_772 at 783.412 kb on - strand, within HP15_772 at 783.417 kb on - strand, within HP15_772 at 783.417 kb on - strand, within HP15_772 at 783.551 kb on - strand at 783.564 kb on + strand at 783.839 kb on - strand at 783.915 kb on - strand at 783.917 kb on - strand at 783.998 kb on - strand at 784.298 kb on + strand, within HP15_774 at 784.298 kb on + strand, within HP15_774 at 784.306 kb on - strand, within HP15_774 at 784.344 kb on + strand, within HP15_774 at 784.388 kb on - strand, within HP15_774 at 784.436 kb on + strand, within HP15_774 at 784.436 kb on + strand, within HP15_774 at 784.501 kb on - strand, within HP15_774 at 784.706 kb on - strand, within HP15_774
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 782,567 - HP15_771 0.48 -3.1 782,651 + HP15_771 0.56 -0.8 782,868 - HP15_771 0.78 -2.8 783,138 + +1.4 783,306 + HP15_772 0.42 +0.9 783,306 + HP15_772 0.42 +1.2 783,314 - HP15_772 0.44 +0.2 783,382 + HP15_772 0.59 -0.8 783,390 - HP15_772 0.60 -0.2 783,412 - HP15_772 0.65 +1.1 783,417 - HP15_772 0.66 +2.1 783,417 - HP15_772 0.66 -0.4 783,551 - +1.0 783,564 + -0.2 783,839 - -0.3 783,915 - -1.0 783,917 - -0.6 783,998 - -1.8 784,298 + HP15_774 0.26 -5.4 784,298 + HP15_774 0.26 -3.5 784,306 - HP15_774 0.27 -2.9 784,344 + HP15_774 0.29 -0.7 784,388 - HP15_774 0.32 -3.1 784,436 + HP15_774 0.35 -3.0 784,436 + HP15_774 0.35 -2.8 784,501 - HP15_774 0.39 -3.5 784,706 - HP15_774 0.51 -2.3
Or see this region's nucleotide sequence