Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_620 and HP15_tRNA12 are separated by 128 nucleotides HP15_tRNA12 and HP15_621 are separated by 146 nucleotides HP15_621 and HP15_622 are separated by 6 nucleotides HP15_622 and HP15_623 are separated by 15 nucleotides HP15_623 and HP15_624 are separated by 122 nucleotides
HP15_620: HP15_620 - conserved hypothetical protein, secreted, at 643,678 to 645,561
_620
HP15_tRNA12: HP15_tRNA12 - tRNA-Leu, at 645,690 to 645,776
_tRNA12
HP15_621: HP15_621 - hypothetical protein, at 645,923 to 646,156
_621
HP15_622: HP15_622 - exoribonuclease R, at 646,163 to 648,604
_622
HP15_623: HP15_623 - RNA methyltransferase, TrmH family, group 3, at 648,620 to 649,357
_623
HP15_624: HP15_624 - hypothetical protein, at 649,480 to 649,635
_624
Position (kb) 646
647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 645.220 kb on + strand, within HP15_620 at 645.221 kb on - strand, within HP15_620 at 645.325 kb on + strand, within HP15_620 at 645.333 kb on - strand, within HP15_620 at 645.343 kb on - strand, within HP15_620 at 645.454 kb on + strand at 645.611 kb on + strand at 645.618 kb on + strand at 645.628 kb on - strand at 645.904 kb on + strand at 645.958 kb on - strand, within HP15_621 at 645.980 kb on + strand, within HP15_621 at 645.982 kb on + strand, within HP15_621 at 645.982 kb on + strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.995 kb on - strand, within HP15_621 at 646.020 kb on + strand, within HP15_621 at 646.191 kb on - strand at 646.195 kb on + strand at 646.300 kb on - strand at 646.359 kb on + strand at 646.571 kb on - strand, within HP15_622 at 646.571 kb on - strand, within HP15_622 at 646.571 kb on - strand, within HP15_622 at 646.839 kb on + strand, within HP15_622 at 646.957 kb on - strand, within HP15_622 at 647.029 kb on + strand, within HP15_622 at 647.076 kb on - strand, within HP15_622 at 647.095 kb on + strand, within HP15_622 at 647.238 kb on + strand, within HP15_622 at 647.244 kb on - strand, within HP15_622 at 647.246 kb on - strand, within HP15_622 at 647.255 kb on - strand, within HP15_622 at 647.334 kb on + strand, within HP15_622 at 647.443 kb on - strand, within HP15_622 at 647.448 kb on - strand, within HP15_622 at 647.539 kb on + strand, within HP15_622 at 647.547 kb on - strand, within HP15_622 at 647.565 kb on - strand, within HP15_622 at 647.616 kb on + strand, within HP15_622 at 647.624 kb on + strand, within HP15_622 at 647.624 kb on - strand, within HP15_622 at 647.624 kb on - strand, within HP15_622 at 647.626 kb on + strand, within HP15_622 at 647.632 kb on - strand, within HP15_622 at 647.680 kb on + strand, within HP15_622 at 647.697 kb on - strand, within HP15_622 at 647.752 kb on - strand, within HP15_622 at 648.022 kb on - strand, within HP15_622 at 648.336 kb on - strand, within HP15_622 at 648.382 kb on - strand at 648.694 kb on + strand, within HP15_623 at 648.727 kb on + strand, within HP15_623 at 648.958 kb on - strand, within HP15_623 at 649.014 kb on - strand, within HP15_623 at 649.291 kb on - strand at 649.301 kb on - strand at 649.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 645,220 + HP15_620 0.82 +1.1 645,221 - HP15_620 0.82 -0.1 645,325 + HP15_620 0.87 -0.7 645,333 - HP15_620 0.88 +1.2 645,343 - HP15_620 0.88 +1.9 645,454 + -0.5 645,611 + +1.7 645,618 + -0.7 645,628 - +0.9 645,904 + -0.3 645,958 - HP15_621 0.15 -0.6 645,980 + HP15_621 0.24 +0.5 645,982 + HP15_621 0.25 +0.0 645,982 + HP15_621 0.25 -0.9 645,990 - HP15_621 0.29 +0.0 645,990 - HP15_621 0.29 -1.1 645,990 - HP15_621 0.29 -1.6 645,990 - HP15_621 0.29 -2.2 645,995 - HP15_621 0.31 +0.2 646,020 + HP15_621 0.41 +0.1 646,191 - -2.4 646,195 + -1.7 646,300 - -1.4 646,359 + -0.5 646,571 - HP15_622 0.17 -3.0 646,571 - HP15_622 0.17 -2.3 646,571 - HP15_622 0.17 -2.2 646,839 + HP15_622 0.28 +0.1 646,957 - HP15_622 0.33 -2.9 647,029 + HP15_622 0.35 -1.5 647,076 - HP15_622 0.37 -1.0 647,095 + HP15_622 0.38 -1.5 647,238 + HP15_622 0.44 -1.8 647,244 - HP15_622 0.44 -1.1 647,246 - HP15_622 0.44 -2.1 647,255 - HP15_622 0.45 -1.9 647,334 + HP15_622 0.48 -2.1 647,443 - HP15_622 0.52 -2.0 647,448 - HP15_622 0.53 -0.9 647,539 + HP15_622 0.56 -1.9 647,547 - HP15_622 0.57 -1.6 647,565 - HP15_622 0.57 -1.7 647,616 + HP15_622 0.60 -1.2 647,624 + HP15_622 0.60 -1.3 647,624 - HP15_622 0.60 +0.1 647,624 - HP15_622 0.60 -1.7 647,626 + HP15_622 0.60 +0.1 647,632 - HP15_622 0.60 -2.0 647,680 + HP15_622 0.62 -0.0 647,697 - HP15_622 0.63 -0.6 647,752 - HP15_622 0.65 -2.2 648,022 - HP15_622 0.76 -2.5 648,336 - HP15_622 0.89 -1.0 648,382 - +1.4 648,694 + HP15_623 0.10 -0.7 648,727 + HP15_623 0.14 +0.7 648,958 - HP15_623 0.46 +0.0 649,014 - HP15_623 0.53 +0.1 649,291 - -1.2 649,301 - -0.3 649,358 + +0.4
Or see this region's nucleotide sequence