Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_428 and HP15_429 are separated by 560 nucleotides HP15_429 and HP15_430 are separated by 112 nucleotides
HP15_428: HP15_428 - glutamine synthetase, type I, at 426,205 to 427,608
_428
HP15_429: HP15_429 - GTP-binding protein TypA, at 428,169 to 429,980
_429
HP15_430: HP15_430 - peptidase S33, proline iminopeptidase 1, at 430,093 to 431,055
_430
Position (kb) 428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 427.794 kb on + strand at 427.794 kb on + strand at 427.802 kb on - strand at 427.921 kb on - strand at 428.217 kb on + strand at 428.221 kb on + strand at 428.235 kb on - strand at 428.292 kb on + strand at 428.298 kb on + strand at 428.406 kb on + strand, within HP15_429 at 428.487 kb on + strand, within HP15_429 at 428.495 kb on - strand, within HP15_429 at 428.867 kb on - strand, within HP15_429 at 428.898 kb on + strand, within HP15_429 at 428.922 kb on - strand, within HP15_429 at 429.049 kb on - strand, within HP15_429 at 429.193 kb on + strand, within HP15_429 at 429.193 kb on + strand, within HP15_429 at 429.201 kb on - strand, within HP15_429 at 429.240 kb on - strand, within HP15_429 at 429.406 kb on - strand, within HP15_429 at 429.449 kb on - strand, within HP15_429 at 429.667 kb on - strand, within HP15_429 at 429.686 kb on - strand, within HP15_429 at 429.835 kb on + strand at 429.838 kb on - strand at 429.871 kb on + strand at 429.917 kb on - strand at 429.918 kb on - strand at 429.988 kb on + strand at 430.209 kb on + strand, within HP15_430 at 430.291 kb on + strand, within HP15_430 at 430.311 kb on + strand, within HP15_430 at 430.311 kb on + strand, within HP15_430 at 430.319 kb on - strand, within HP15_430 at 430.329 kb on + strand, within HP15_430 at 430.364 kb on - strand, within HP15_430 at 430.377 kb on - strand, within HP15_430 at 430.458 kb on - strand, within HP15_430 at 430.604 kb on + strand, within HP15_430 at 430.670 kb on - strand, within HP15_430 at 430.700 kb on + strand, within HP15_430 at 430.765 kb on + strand, within HP15_430 at 430.824 kb on + strand, within HP15_430 at 430.827 kb on - strand, within HP15_430 at 430.893 kb on - strand, within HP15_430 at 430.903 kb on + strand, within HP15_430 at 430.926 kb on + strand, within HP15_430 at 430.926 kb on + strand, within HP15_430 at 430.930 kb on - strand, within HP15_430 at 430.932 kb on + strand, within HP15_430 at 430.952 kb on - strand, within HP15_430
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 427,794 + -0.5 427,794 + -1.9 427,802 - -0.6 427,921 - -0.5 428,217 + -2.5 428,221 + +1.2 428,235 - -0.7 428,292 + -2.3 428,298 + -1.2 428,406 + HP15_429 0.13 -2.8 428,487 + HP15_429 0.18 -1.5 428,495 - HP15_429 0.18 -1.9 428,867 - HP15_429 0.39 -0.1 428,898 + HP15_429 0.40 -1.5 428,922 - HP15_429 0.42 +1.2 429,049 - HP15_429 0.49 -1.0 429,193 + HP15_429 0.57 -2.4 429,193 + HP15_429 0.57 -2.3 429,201 - HP15_429 0.57 -1.0 429,240 - HP15_429 0.59 -0.8 429,406 - HP15_429 0.68 -2.9 429,449 - HP15_429 0.71 -1.6 429,667 - HP15_429 0.83 -1.1 429,686 - HP15_429 0.84 -1.2 429,835 + -1.2 429,838 - -1.9 429,871 + -1.2 429,917 - -0.4 429,918 - -1.9 429,988 + -1.9 430,209 + HP15_430 0.12 +1.4 430,291 + HP15_430 0.21 +1.3 430,311 + HP15_430 0.23 -1.0 430,311 + HP15_430 0.23 -1.5 430,319 - HP15_430 0.23 +1.3 430,329 + HP15_430 0.25 +1.4 430,364 - HP15_430 0.28 +0.4 430,377 - HP15_430 0.29 +0.2 430,458 - HP15_430 0.38 +1.6 430,604 + HP15_430 0.53 +0.3 430,670 - HP15_430 0.60 -0.2 430,700 + HP15_430 0.63 +1.5 430,765 + HP15_430 0.70 -0.7 430,824 + HP15_430 0.76 +0.0 430,827 - HP15_430 0.76 +1.1 430,893 - HP15_430 0.83 -0.2 430,903 + HP15_430 0.84 -0.9 430,926 + HP15_430 0.87 -0.1 430,926 + HP15_430 0.87 +1.6 430,930 - HP15_430 0.87 +0.7 430,932 + HP15_430 0.87 -1.3 430,952 - HP15_430 0.89 +1.8
Or see this region's nucleotide sequence