Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g39

Experiment: monoculture; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g38 and HP15_p187g39 are separated by 29 nucleotidesHP15_p187g39 and HP15_p187g40 are separated by 141 nucleotides HP15_p187g38: HP15_p187g38 - RND type efflux pump involved in aminoglycoside resistance (AdeT), at 31,520 to 32,551 _p187g38 HP15_p187g39: HP15_p187g39 - conserved hypothetical protein, secreted, at 32,581 to 33,666 _p187g39 HP15_p187g40: HP15_p187g40 - GGDEF family protein, at 33,808 to 34,683 _p187g40 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2 3at 31.623 kb on + strandat 31.631 kb on - strand, within HP15_p187g38at 31.650 kb on - strand, within HP15_p187g38at 31.677 kb on + strand, within HP15_p187g38at 31.677 kb on + strand, within HP15_p187g38at 31.677 kb on + strand, within HP15_p187g38at 31.677 kb on + strand, within HP15_p187g38at 31.677 kb on + strand, within HP15_p187g38at 31.677 kb on + strand, within HP15_p187g38at 31.677 kb on + strand, within HP15_p187g38at 31.677 kb on + strand, within HP15_p187g38at 31.677 kb on + strand, within HP15_p187g38at 31.685 kb on - strand, within HP15_p187g38at 31.685 kb on - strand, within HP15_p187g38at 31.714 kb on + strand, within HP15_p187g38at 31.749 kb on + strand, within HP15_p187g38at 31.774 kb on - strand, within HP15_p187g38at 31.787 kb on + strand, within HP15_p187g38at 31.862 kb on + strand, within HP15_p187g38at 31.867 kb on + strand, within HP15_p187g38at 31.881 kb on + strand, within HP15_p187g38at 31.881 kb on + strand, within HP15_p187g38at 31.883 kb on + strand, within HP15_p187g38at 31.883 kb on + strand, within HP15_p187g38at 31.883 kb on + strand, within HP15_p187g38at 31.883 kb on + strand, within HP15_p187g38at 31.889 kb on - strand, within HP15_p187g38at 31.890 kb on + strand, within HP15_p187g38at 31.890 kb on + strand, within HP15_p187g38at 31.890 kb on + strand, within HP15_p187g38at 31.890 kb on + strand, within HP15_p187g38at 31.890 kb on + strand, within HP15_p187g38at 31.891 kb on - strand, within HP15_p187g38at 31.898 kb on - strand, within HP15_p187g38at 31.898 kb on - strand, within HP15_p187g38at 31.898 kb on - strand, within HP15_p187g38at 31.898 kb on - strand, within HP15_p187g38at 31.898 kb on - strand, within HP15_p187g38at 31.898 kb on - strand, within HP15_p187g38at 31.936 kb on - strand, within HP15_p187g38at 31.943 kb on + strand, within HP15_p187g38at 31.988 kb on + strand, within HP15_p187g38at 31.989 kb on + strand, within HP15_p187g38at 31.996 kb on + strand, within HP15_p187g38at 31.998 kb on - strand, within HP15_p187g38at 31.998 kb on - strand, within HP15_p187g38at 31.998 kb on - strand, within HP15_p187g38at 32.049 kb on - strand, within HP15_p187g38at 32.143 kb on + strand, within HP15_p187g38at 32.143 kb on + strand, within HP15_p187g38at 32.143 kb on + strand, within HP15_p187g38at 32.151 kb on - strand, within HP15_p187g38at 32.151 kb on - strand, within HP15_p187g38at 32.151 kb on - strand, within HP15_p187g38at 32.151 kb on - strand, within HP15_p187g38at 32.180 kb on + strand, within HP15_p187g38at 32.193 kb on - strand, within HP15_p187g38at 32.233 kb on - strand, within HP15_p187g38at 32.249 kb on - strand, within HP15_p187g38at 32.277 kb on + strand, within HP15_p187g38at 32.280 kb on - strand, within HP15_p187g38at 32.285 kb on - strand, within HP15_p187g38at 32.285 kb on - strand, within HP15_p187g38at 32.349 kb on + strand, within HP15_p187g38at 32.349 kb on + strand, within HP15_p187g38at 32.349 kb on + strand, within HP15_p187g38at 32.349 kb on + strand, within HP15_p187g38at 32.349 kb on + strand, within HP15_p187g38at 32.355 kb on + strand, within HP15_p187g38at 32.356 kb on + strand, within HP15_p187g38at 32.357 kb on - strand, within HP15_p187g38at 32.464 kb on - strandat 32.476 kb on + strandat 32.496 kb on - strandat 32.503 kb on - strandat 32.539 kb on + strandat 32.539 kb on + strandat 32.547 kb on - strandat 32.551 kb on + strandat 32.579 kb on + strandat 32.587 kb on - strandat 32.593 kb on + strandat 32.606 kb on - strandat 32.613 kb on - strandat 32.670 kb on + strandat 32.671 kb on - strandat 32.678 kb on - strandat 32.689 kb on + strandat 32.697 kb on - strand, within HP15_p187g39at 32.712 kb on - strand, within HP15_p187g39at 32.773 kb on + strand, within HP15_p187g39at 32.785 kb on + strand, within HP15_p187g39at 32.786 kb on - strand, within HP15_p187g39at 32.793 kb on - strand, within HP15_p187g39at 32.817 kb on + strand, within HP15_p187g39at 32.832 kb on - strand, within HP15_p187g39at 32.847 kb on + strand, within HP15_p187g39at 32.891 kb on + strand, within HP15_p187g39at 32.891 kb on - strand, within HP15_p187g39at 32.899 kb on - strand, within HP15_p187g39at 32.899 kb on - strand, within HP15_p187g39at 32.913 kb on + strand, within HP15_p187g39at 32.913 kb on + strand, within HP15_p187g39at 32.913 kb on + strand, within HP15_p187g39at 32.913 kb on + strand, within HP15_p187g39at 32.915 kb on + strand, within HP15_p187g39at 32.915 kb on + strand, within HP15_p187g39at 32.915 kb on + strand, within HP15_p187g39at 32.921 kb on - strand, within HP15_p187g39at 32.921 kb on - strand, within HP15_p187g39at 32.923 kb on - strand, within HP15_p187g39at 32.923 kb on - strand, within HP15_p187g39at 33.020 kb on + strand, within HP15_p187g39at 33.046 kb on - strand, within HP15_p187g39at 33.054 kb on + strand, within HP15_p187g39at 33.104 kb on - strand, within HP15_p187g39at 33.176 kb on + strand, within HP15_p187g39at 33.190 kb on + strand, within HP15_p187g39at 33.227 kb on + strand, within HP15_p187g39at 33.347 kb on - strand, within HP15_p187g39at 33.369 kb on + strand, within HP15_p187g39at 33.393 kb on + strand, within HP15_p187g39at 33.393 kb on + strand, within HP15_p187g39at 33.393 kb on + strand, within HP15_p187g39at 33.401 kb on - strand, within HP15_p187g39at 33.425 kb on + strand, within HP15_p187g39at 33.451 kb on + strand, within HP15_p187g39at 33.459 kb on - strand, within HP15_p187g39at 33.459 kb on - strand, within HP15_p187g39at 33.459 kb on - strand, within HP15_p187g39at 33.532 kb on + strand, within HP15_p187g39at 33.545 kb on - strand, within HP15_p187g39at 33.546 kb on + strand, within HP15_p187g39at 33.591 kb on + strandat 33.599 kb on - strandat 33.599 kb on - strandat 33.821 kb on + strandat 33.824 kb on - strandat 33.824 kb on - strandat 33.865 kb on - strandat 33.865 kb on - strandat 33.887 kb on - strandat 33.889 kb on - strandat 33.907 kb on + strand, within HP15_p187g40at 33.912 kb on + strand, within HP15_p187g40at 33.915 kb on - strand, within HP15_p187g40at 33.920 kb on - strand, within HP15_p187g40at 33.930 kb on + strand, within HP15_p187g40at 33.931 kb on + strand, within HP15_p187g40at 33.932 kb on + strand, within HP15_p187g40at 33.956 kb on + strand, within HP15_p187g40at 33.964 kb on - strand, within HP15_p187g40at 33.964 kb on - strand, within HP15_p187g40at 33.964 kb on - strand, within HP15_p187g40at 33.966 kb on + strand, within HP15_p187g40at 33.966 kb on + strand, within HP15_p187g40at 33.969 kb on - strand, within HP15_p187g40at 33.974 kb on - strand, within HP15_p187g40at 33.998 kb on + strand, within HP15_p187g40at 34.005 kb on + strand, within HP15_p187g40at 34.013 kb on + strand, within HP15_p187g40at 34.020 kb on + strand, within HP15_p187g40at 34.030 kb on + strand, within HP15_p187g40at 34.067 kb on + strand, within HP15_p187g40at 34.067 kb on + strand, within HP15_p187g40at 34.075 kb on + strand, within HP15_p187g40at 34.075 kb on - strand, within HP15_p187g40at 34.083 kb on + strand, within HP15_p187g40at 34.083 kb on - strand, within HP15_p187g40at 34.086 kb on - strand, within HP15_p187g40at 34.097 kb on + strand, within HP15_p187g40at 34.097 kb on + strand, within HP15_p187g40at 34.097 kb on + strand, within HP15_p187g40at 34.112 kb on + strand, within HP15_p187g40at 34.127 kb on + strand, within HP15_p187g40at 34.131 kb on - strand, within HP15_p187g40at 34.135 kb on - strand, within HP15_p187g40at 34.141 kb on + strand, within HP15_p187g40at 34.147 kb on - strand, within HP15_p187g40at 34.149 kb on - strand, within HP15_p187g40at 34.149 kb on - strand, within HP15_p187g40at 34.174 kb on + strand, within HP15_p187g40at 34.188 kb on + strand, within HP15_p187g40at 34.241 kb on + strand, within HP15_p187g40at 34.272 kb on + strand, within HP15_p187g40at 34.273 kb on + strand, within HP15_p187g40at 34.321 kb on + strand, within HP15_p187g40at 34.321 kb on + strand, within HP15_p187g40at 34.329 kb on - strand, within HP15_p187g40at 34.382 kb on - strand, within HP15_p187g40at 34.421 kb on + strand, within HP15_p187g40at 34.441 kb on + strand, within HP15_p187g40at 34.449 kb on - strand, within HP15_p187g40at 34.449 kb on - strand, within HP15_p187g40at 34.451 kb on + strand, within HP15_p187g40at 34.485 kb on - strand, within HP15_p187g40at 34.512 kb on + strand, within HP15_p187g40at 34.519 kb on + strand, within HP15_p187g40at 34.522 kb on + strand, within HP15_p187g40at 34.525 kb on - strand, within HP15_p187g40at 34.581 kb on - strand, within HP15_p187g40at 34.581 kb on - strand, within HP15_p187g40at 34.585 kb on + strand, within HP15_p187g40at 34.609 kb on + strandat 34.609 kb on + strandat 34.609 kb on + strandat 34.609 kb on + strandat 34.612 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.625 kb on + strandat 34.625 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
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31,623 + -0.3
31,631 - HP15_p187g38 0.11 +0.4
31,650 - HP15_p187g38 0.13 -0.5
31,677 + HP15_p187g38 0.15 -0.5
31,677 + HP15_p187g38 0.15 +1.5
31,677 + HP15_p187g38 0.15 +1.1
31,677 + HP15_p187g38 0.15 +2.4
31,677 + HP15_p187g38 0.15 +1.8
31,677 + HP15_p187g38 0.15 -1.3
31,677 + HP15_p187g38 0.15 +0.9
31,677 + HP15_p187g38 0.15 +0.6
31,677 + HP15_p187g38 0.15 -0.6
31,685 - HP15_p187g38 0.16 +2.1
31,685 - HP15_p187g38 0.16 +0.1
31,714 + HP15_p187g38 0.19 +1.2
31,749 + HP15_p187g38 0.22 +1.0
31,774 - HP15_p187g38 0.25 -0.5
31,787 + HP15_p187g38 0.26 +0.1
31,862 + HP15_p187g38 0.33 -1.3
31,867 + HP15_p187g38 0.34 +0.6
31,881 + HP15_p187g38 0.35 +1.2
31,881 + HP15_p187g38 0.35 -0.6
31,883 + HP15_p187g38 0.35 +1.0
31,883 + HP15_p187g38 0.35 +0.4
31,883 + HP15_p187g38 0.35 +2.2
31,883 + HP15_p187g38 0.35 +1.0
31,889 - HP15_p187g38 0.36 -0.5
31,890 + HP15_p187g38 0.36 -0.5
31,890 + HP15_p187g38 0.36 +1.4
31,890 + HP15_p187g38 0.36 -0.4
31,890 + HP15_p187g38 0.36 -0.3
31,890 + HP15_p187g38 0.36 -0.7
31,891 - HP15_p187g38 0.36 -1.3
31,898 - HP15_p187g38 0.37 -1.0
31,898 - HP15_p187g38 0.37 -1.2
31,898 - HP15_p187g38 0.37 +0.1
31,898 - HP15_p187g38 0.37 +2.3
31,898 - HP15_p187g38 0.37 +0.3
31,898 - HP15_p187g38 0.37 +1.6
31,936 - HP15_p187g38 0.40 -0.4
31,943 + HP15_p187g38 0.41 -2.3
31,988 + HP15_p187g38 0.45 -0.7
31,989 + HP15_p187g38 0.45 +0.8
31,996 + HP15_p187g38 0.46 -1.4
31,998 - HP15_p187g38 0.46 -0.9
31,998 - HP15_p187g38 0.46 +0.2
31,998 - HP15_p187g38 0.46 +0.3
32,049 - HP15_p187g38 0.51 +0.6
32,143 + HP15_p187g38 0.60 -0.1
32,143 + HP15_p187g38 0.60 +0.4
32,143 + HP15_p187g38 0.60 -0.3
32,151 - HP15_p187g38 0.61 +1.1
32,151 - HP15_p187g38 0.61 +1.5
32,151 - HP15_p187g38 0.61 -1.8
32,151 - HP15_p187g38 0.61 -1.0
32,180 + HP15_p187g38 0.64 +0.4
32,193 - HP15_p187g38 0.65 -0.5
32,233 - HP15_p187g38 0.69 -0.6
32,249 - HP15_p187g38 0.71 -0.5
32,277 + HP15_p187g38 0.73 +1.1
32,280 - HP15_p187g38 0.74 -0.7
32,285 - HP15_p187g38 0.74 -0.8
32,285 - HP15_p187g38 0.74 +1.2
32,349 + HP15_p187g38 0.80 -0.3
32,349 + HP15_p187g38 0.80 +1.8
32,349 + HP15_p187g38 0.80 -0.5
32,349 + HP15_p187g38 0.80 +1.2
32,349 + HP15_p187g38 0.80 -0.9
32,355 + HP15_p187g38 0.81 +1.1
32,356 + HP15_p187g38 0.81 -0.5
32,357 - HP15_p187g38 0.81 -0.5
32,464 - +1.6
32,476 + -0.1
32,496 - -0.1
32,503 - -0.4
32,539 + -1.0
32,539 + -0.2
32,547 - -0.4
32,551 + -0.0
32,579 + -1.7
32,587 - +0.7
32,593 + -0.2
32,606 - -0.2
32,613 - -0.1
32,670 + +1.4
32,671 - -1.1
32,678 - -0.5
32,689 + +1.8
32,697 - HP15_p187g39 0.11 +1.0
32,712 - HP15_p187g39 0.12 +0.6
32,773 + HP15_p187g39 0.18 -1.3
32,785 + HP15_p187g39 0.19 -1.0
32,786 - HP15_p187g39 0.19 +1.4
32,793 - HP15_p187g39 0.20 -0.6
32,817 + HP15_p187g39 0.22 -0.0
32,832 - HP15_p187g39 0.23 -0.3
32,847 + HP15_p187g39 0.24 -0.6
32,891 + HP15_p187g39 0.29 +2.3
32,891 - HP15_p187g39 0.29 -0.4
32,899 - HP15_p187g39 0.29 -0.9
32,899 - HP15_p187g39 0.29 +1.2
32,913 + HP15_p187g39 0.31 -0.1
32,913 + HP15_p187g39 0.31 -0.3
32,913 + HP15_p187g39 0.31 +0.4
32,913 + HP15_p187g39 0.31 +0.6
32,915 + HP15_p187g39 0.31 -2.0
32,915 + HP15_p187g39 0.31 -0.6
32,915 + HP15_p187g39 0.31 +0.4
32,921 - HP15_p187g39 0.31 +0.9
32,921 - HP15_p187g39 0.31 +0.1
32,923 - HP15_p187g39 0.31 +1.2
32,923 - HP15_p187g39 0.31 -0.5
33,020 + HP15_p187g39 0.40 +0.7
33,046 - HP15_p187g39 0.43 +0.3
33,054 + HP15_p187g39 0.44 +0.4
33,104 - HP15_p187g39 0.48 +1.3
33,176 + HP15_p187g39 0.55 -0.3
33,190 + HP15_p187g39 0.56 -0.5
33,227 + HP15_p187g39 0.59 -1.1
33,347 - HP15_p187g39 0.71 -0.4
33,369 + HP15_p187g39 0.73 -0.1
33,393 + HP15_p187g39 0.75 -0.6
33,393 + HP15_p187g39 0.75 -0.3
33,393 + HP15_p187g39 0.75 -0.7
33,401 - HP15_p187g39 0.76 -0.2
33,425 + HP15_p187g39 0.78 -0.3
33,451 + HP15_p187g39 0.80 +1.8
33,459 - HP15_p187g39 0.81 -0.8
33,459 - HP15_p187g39 0.81 -0.6
33,459 - HP15_p187g39 0.81 +0.1
33,532 + HP15_p187g39 0.88 +0.2
33,545 - HP15_p187g39 0.89 -0.1
33,546 + HP15_p187g39 0.89 +1.6
33,591 + -0.5
33,599 - -0.7
33,599 - -0.9
33,821 + +1.8
33,824 - +1.0
33,824 - +0.2
33,865 - +0.9
33,865 - +1.5
33,887 - -0.1
33,889 - +2.3
33,907 + HP15_p187g40 0.11 -0.2
33,912 + HP15_p187g40 0.12 -0.6
33,915 - HP15_p187g40 0.12 -0.4
33,920 - HP15_p187g40 0.13 +0.2
33,930 + HP15_p187g40 0.14 +1.2
33,931 + HP15_p187g40 0.14 +1.1
33,932 + HP15_p187g40 0.14 -0.3
33,956 + HP15_p187g40 0.17 +1.2
33,964 - HP15_p187g40 0.18 +1.5
33,964 - HP15_p187g40 0.18 -1.1
33,964 - HP15_p187g40 0.18 -0.3
33,966 + HP15_p187g40 0.18 +2.8
33,966 + HP15_p187g40 0.18 -0.1
33,969 - HP15_p187g40 0.18 -0.4
33,974 - HP15_p187g40 0.19 +0.1
33,998 + HP15_p187g40 0.22 +0.2
34,005 + HP15_p187g40 0.22 +0.5
34,013 + HP15_p187g40 0.23 +0.4
34,020 + HP15_p187g40 0.24 -0.4
34,030 + HP15_p187g40 0.25 -0.1
34,067 + HP15_p187g40 0.30 +1.2
34,067 + HP15_p187g40 0.30 -0.1
34,075 + HP15_p187g40 0.30 +0.0
34,075 - HP15_p187g40 0.30 +0.7
34,083 + HP15_p187g40 0.31 +1.0
34,083 - HP15_p187g40 0.31 +1.0
34,086 - HP15_p187g40 0.32 +0.8
34,097 + HP15_p187g40 0.33 +0.3
34,097 + HP15_p187g40 0.33 -0.4
34,097 + HP15_p187g40 0.33 -0.1
34,112 + HP15_p187g40 0.35 +1.0
34,127 + HP15_p187g40 0.36 -0.1
34,131 - HP15_p187g40 0.37 -0.7
34,135 - HP15_p187g40 0.37 +1.3
34,141 + HP15_p187g40 0.38 -1.2
34,147 - HP15_p187g40 0.39 -0.6
34,149 - HP15_p187g40 0.39 -0.4
34,149 - HP15_p187g40 0.39 +1.5
34,174 + HP15_p187g40 0.42 -0.5
34,188 + HP15_p187g40 0.43 -2.1
34,241 + HP15_p187g40 0.49 -0.7
34,272 + HP15_p187g40 0.53 +1.5
34,273 + HP15_p187g40 0.53 +2.0
34,321 + HP15_p187g40 0.59 -0.4
34,321 + HP15_p187g40 0.59 +0.1
34,329 - HP15_p187g40 0.59 -0.3
34,382 - HP15_p187g40 0.66 -1.0
34,421 + HP15_p187g40 0.70 +0.2
34,441 + HP15_p187g40 0.72 -1.5
34,449 - HP15_p187g40 0.73 +2.4
34,449 - HP15_p187g40 0.73 -0.2
34,451 + HP15_p187g40 0.73 +0.6
34,485 - HP15_p187g40 0.77 +1.3
34,512 + HP15_p187g40 0.80 +0.5
34,519 + HP15_p187g40 0.81 +1.8
34,522 + HP15_p187g40 0.82 -0.4
34,525 - HP15_p187g40 0.82 +2.1
34,581 - HP15_p187g40 0.88 -1.2
34,581 - HP15_p187g40 0.88 -0.6
34,585 + HP15_p187g40 0.89 +0.7
34,609 + -1.3
34,609 + +0.3
34,609 + +1.4
34,609 + +1.3
34,612 - +2.0
34,617 - -0.3
34,617 - -0.6
34,625 + +1.5
34,625 + +0.9

Or see this region's nucleotide sequence