Strain Fitness in Marinobacter adhaerens HP15 around HP15_43

Experiment: monoculture; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_42 and HP15_43 are separated by 93 nucleotidesHP15_43 and HP15_44 are separated by 179 nucleotidesHP15_44 and HP15_45 are separated by 71 nucleotides HP15_42: HP15_42 - short-chain dehydrogenase/reductase SDR, at 46,197 to 46,997 _42 HP15_43: HP15_43 - crotonobetaine/carnitine-CoA ligase, at 47,091 to 48,722 _43 HP15_44: HP15_44 - DitK protein, at 48,902 to 49,600 _44 HP15_45: HP15_45 - hypothetical protein, at 49,672 to 49,779 _45 Position (kb) 47 48 49Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 46.211 kb on + strandat 46.258 kb on + strandat 46.327 kb on - strand, within HP15_42at 46.341 kb on + strand, within HP15_42at 46.431 kb on + strand, within HP15_42at 46.541 kb on + strand, within HP15_42at 46.541 kb on + strand, within HP15_42at 46.596 kb on + strand, within HP15_42at 46.596 kb on + strand, within HP15_42at 46.596 kb on + strand, within HP15_42at 46.645 kb on - strand, within HP15_42at 46.773 kb on - strand, within HP15_42at 46.796 kb on - strand, within HP15_42at 46.938 kb on + strandat 47.027 kb on - strandat 47.070 kb on + strandat 47.155 kb on + strandat 47.243 kb on + strandat 47.285 kb on + strand, within HP15_43at 47.293 kb on - strand, within HP15_43at 47.293 kb on - strand, within HP15_43at 47.311 kb on - strand, within HP15_43at 47.323 kb on - strand, within HP15_43at 47.325 kb on + strand, within HP15_43at 47.325 kb on + strand, within HP15_43at 47.333 kb on - strand, within HP15_43at 47.488 kb on - strand, within HP15_43at 47.529 kb on + strand, within HP15_43at 47.535 kb on - strand, within HP15_43at 47.537 kb on - strand, within HP15_43at 47.559 kb on - strand, within HP15_43at 47.573 kb on + strand, within HP15_43at 47.600 kb on - strand, within HP15_43at 47.685 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.830 kb on + strand, within HP15_43at 47.906 kb on + strand, within HP15_43at 47.909 kb on - strand, within HP15_43at 47.929 kb on - strand, within HP15_43at 48.002 kb on - strand, within HP15_43at 48.022 kb on - strand, within HP15_43at 48.022 kb on - strand, within HP15_43at 48.061 kb on - strand, within HP15_43at 48.109 kb on + strand, within HP15_43at 48.152 kb on + strand, within HP15_43at 48.152 kb on + strand, within HP15_43at 48.160 kb on - strand, within HP15_43at 48.183 kb on + strand, within HP15_43at 48.191 kb on - strand, within HP15_43at 48.341 kb on - strand, within HP15_43at 48.459 kb on - strand, within HP15_43at 48.485 kb on - strand, within HP15_43at 48.575 kb on - strandat 48.657 kb on - strandat 48.662 kb on - strandat 48.662 kb on - strandat 48.681 kb on - strandat 48.876 kb on + strandat 48.889 kb on + strandat 48.892 kb on - strandat 48.959 kb on - strandat 48.971 kb on - strandat 48.979 kb on + strand, within HP15_44at 48.999 kb on - strand, within HP15_44at 49.047 kb on + strand, within HP15_44at 49.279 kb on - strand, within HP15_44at 49.342 kb on - strand, within HP15_44at 49.385 kb on - strand, within HP15_44at 49.542 kb on + strandat 49.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
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46,211 + -0.7
46,258 + +1.0
46,327 - HP15_42 0.16 -0.5
46,341 + HP15_42 0.18 +0.6
46,431 + HP15_42 0.29 -1.4
46,541 + HP15_42 0.43 -0.5
46,541 + HP15_42 0.43 -0.9
46,596 + HP15_42 0.50 +0.4
46,596 + HP15_42 0.50 -0.8
46,596 + HP15_42 0.50 -0.7
46,645 - HP15_42 0.56 +0.2
46,773 - HP15_42 0.72 -0.1
46,796 - HP15_42 0.75 -0.8
46,938 + -0.7
47,027 - -0.4
47,070 + -1.3
47,155 + -1.1
47,243 + -0.7
47,285 + HP15_43 0.12 -0.0
47,293 - HP15_43 0.12 +1.2
47,293 - HP15_43 0.12 +1.6
47,311 - HP15_43 0.13 +1.0
47,323 - HP15_43 0.14 +0.8
47,325 + HP15_43 0.14 +0.9
47,325 + HP15_43 0.14 -0.1
47,333 - HP15_43 0.15 +0.9
47,488 - HP15_43 0.24 +1.5
47,529 + HP15_43 0.27 -0.8
47,535 - HP15_43 0.27 -0.4
47,537 - HP15_43 0.27 +0.9
47,559 - HP15_43 0.29 +0.9
47,573 + HP15_43 0.30 +1.5
47,600 - HP15_43 0.31 -0.0
47,685 + HP15_43 0.36 -0.3
47,809 + HP15_43 0.44 +0.3
47,809 + HP15_43 0.44 +0.2
47,809 + HP15_43 0.44 +2.2
47,809 + HP15_43 0.44 +0.0
47,809 + HP15_43 0.44 -0.4
47,809 + HP15_43 0.44 +1.1
47,809 + HP15_43 0.44 +1.3
47,809 + HP15_43 0.44 +1.3
47,809 + HP15_43 0.44 -0.2
47,809 + HP15_43 0.44 +0.9
47,817 - HP15_43 0.44 +1.1
47,817 - HP15_43 0.44 +0.8
47,817 - HP15_43 0.44 +2.1
47,817 - HP15_43 0.44 +0.1
47,817 - HP15_43 0.44 -0.1
47,817 - HP15_43 0.44 -0.4
47,830 + HP15_43 0.45 -0.3
47,906 + HP15_43 0.50 +1.1
47,909 - HP15_43 0.50 -0.6
47,929 - HP15_43 0.51 +1.5
48,002 - HP15_43 0.56 +1.4
48,022 - HP15_43 0.57 +0.3
48,022 - HP15_43 0.57 +1.1
48,061 - HP15_43 0.59 +0.5
48,109 + HP15_43 0.62 +1.0
48,152 + HP15_43 0.65 +0.3
48,152 + HP15_43 0.65 +0.3
48,160 - HP15_43 0.66 +0.1
48,183 + HP15_43 0.67 +0.8
48,191 - HP15_43 0.67 +1.5
48,341 - HP15_43 0.77 -0.6
48,459 - HP15_43 0.84 -0.8
48,485 - HP15_43 0.85 +0.6
48,575 - +0.6
48,657 - +1.1
48,662 - +1.5
48,662 - +0.0
48,681 - +0.7
48,876 + -2.6
48,889 + +0.7
48,892 - -2.0
48,959 - -0.8
48,971 - -1.1
48,979 + HP15_44 0.11 -0.6
48,999 - HP15_44 0.14 -3.2
49,047 + HP15_44 0.21 -0.3
49,279 - HP15_44 0.54 -1.1
49,342 - HP15_44 0.63 +0.7
49,385 - HP15_44 0.69 -4.1
49,542 + -1.7
49,569 - -0.5

Or see this region's nucleotide sequence