Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3929 and HP15_3930 are separated by 39 nucleotides HP15_3930 and HP15_3931 are separated by 25 nucleotides HP15_3931 and HP15_3932 are separated by 72 nucleotides HP15_3932 and HP15_3933 are separated by 308 nucleotides HP15_3933 and HP15_3934 are separated by 81 nucleotides
HP15_3929: HP15_3929 - acyl-CoA dehydrogenase domain protein, at 4,158,649 to 4,159,845
_3929
HP15_3930: HP15_3930 - putative two component system response regulator, at 4,159,885 to 4,160,151
_3930
HP15_3931: HP15_3931 - hypothetical protein, at 4,160,177 to 4,160,458
_3931
HP15_3932: HP15_3932 - CBS domain containing protein, at 4,160,531 to 4,161,130
_3932
HP15_3933: HP15_3933 - hypothetical protein, at 4,161,439 to 4,161,600
_3933
HP15_3934: HP15_3934 - acetyl-CoA carboxylase biotin carboxylase subunit, at 4,161,682 to 4,163,103
_3934
Position (kb) 4160
4161
4162 Strain fitness (log2 ratio) -1
0
1
2
3 at 4159.613 kb on + strand, within HP15_3929 at 4159.654 kb on + strand, within HP15_3929 at 4159.659 kb on - strand, within HP15_3929 at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.753 kb on - strand at 4159.753 kb on - strand at 4159.753 kb on - strand at 4159.793 kb on + strand at 4160.059 kb on - strand, within HP15_3930 at 4160.086 kb on - strand, within HP15_3930 at 4160.114 kb on + strand, within HP15_3930 at 4160.190 kb on + strand at 4160.193 kb on - strand at 4160.260 kb on + strand, within HP15_3931 at 4160.426 kb on + strand, within HP15_3931 at 4160.461 kb on - strand at 4160.590 kb on - strand at 4160.600 kb on + strand, within HP15_3932 at 4160.702 kb on + strand, within HP15_3932 at 4160.814 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.935 kb on + strand, within HP15_3932 at 4161.020 kb on + strand, within HP15_3932 at 4161.153 kb on + strand at 4161.272 kb on - strand at 4161.330 kb on - strand at 4161.333 kb on + strand at 4161.460 kb on + strand, within HP15_3933 at 4161.462 kb on - strand, within HP15_3933 at 4161.508 kb on - strand, within HP15_3933 at 4161.539 kb on + strand, within HP15_3933 at 4161.739 kb on - strand at 4161.861 kb on + strand, within HP15_3934 at 4161.873 kb on - strand, within HP15_3934 at 4162.095 kb on + strand, within HP15_3934 at 4162.108 kb on - strand, within HP15_3934
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 4,159,613 + HP15_3929 0.81 -0.4 4,159,654 + HP15_3929 0.84 -0.8 4,159,659 - HP15_3929 0.84 +0.3 4,159,745 + +1.1 4,159,745 + -0.4 4,159,745 + +1.9 4,159,745 + -0.7 4,159,753 - -0.4 4,159,753 - +0.5 4,159,753 - -1.3 4,159,793 + -0.8 4,160,059 - HP15_3930 0.65 -0.1 4,160,086 - HP15_3930 0.75 -0.5 4,160,114 + HP15_3930 0.86 -0.2 4,160,190 + -1.3 4,160,193 - +1.4 4,160,260 + HP15_3931 0.29 -0.3 4,160,426 + HP15_3931 0.88 -0.6 4,160,461 - -0.4 4,160,590 - -0.6 4,160,600 + HP15_3932 0.12 -0.0 4,160,702 + HP15_3932 0.28 -0.6 4,160,814 + HP15_3932 0.47 -1.2 4,160,839 + HP15_3932 0.51 -0.2 4,160,839 + HP15_3932 0.51 -0.4 4,160,935 + HP15_3932 0.67 +0.0 4,161,020 + HP15_3932 0.81 +0.8 4,161,153 + -0.6 4,161,272 - +1.5 4,161,330 - +2.8 4,161,333 + -0.2 4,161,460 + HP15_3933 0.13 -1.5 4,161,462 - HP15_3933 0.14 +0.0 4,161,508 - HP15_3933 0.43 -0.2 4,161,539 + HP15_3933 0.62 -0.5 4,161,739 - +0.0 4,161,861 + HP15_3934 0.13 +1.1 4,161,873 - HP15_3934 0.13 +2.0 4,162,095 + HP15_3934 0.29 +1.6 4,162,108 - HP15_3934 0.30 -0.6
Or see this region's nucleotide sequence