Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2981 and HP15_2982 are separated by 6 nucleotides HP15_2982 and HP15_2983 are separated by 86 nucleotides HP15_2983 and HP15_2984 are separated by 454 nucleotides
HP15_2981: HP15_2981 - 3-oxoacyl-(acyl-carrier-protein) synthase I, at 3,123,898 to 3,125,109
_2981
HP15_2982: HP15_2982 - protein containing Helix-turn-helix, AraC domain, at 3,125,116 to 3,125,472
_2982
HP15_2983: HP15_2983 - peptidase, U32 family, at 3,125,559 to 3,126,956
_2983
HP15_2984: HP15_2984 - cysteine desulfurase activator complex subunit SufB, at 3,127,411 to 3,128,883
_2984
Position (kb) 3125
3126
3127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3124.738 kb on - strand, within HP15_2981 at 3124.790 kb on + strand, within HP15_2981 at 3125.077 kb on + strand at 3125.126 kb on - strand at 3125.132 kb on - strand at 3125.240 kb on - strand, within HP15_2982 at 3125.254 kb on + strand, within HP15_2982 at 3125.333 kb on + strand, within HP15_2982 at 3125.394 kb on + strand, within HP15_2982 at 3125.399 kb on + strand, within HP15_2982 at 3125.404 kb on + strand, within HP15_2982 at 3125.445 kb on + strand at 3125.471 kb on + strand at 3125.588 kb on - strand at 3125.628 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.638 kb on + strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.646 kb on - strand at 3125.665 kb on + strand at 3125.673 kb on - strand at 3125.675 kb on + strand at 3125.683 kb on - strand at 3125.683 kb on - strand at 3125.683 kb on - strand at 3125.685 kb on + strand at 3125.713 kb on + strand, within HP15_2983 at 3125.816 kb on + strand, within HP15_2983 at 3125.824 kb on - strand, within HP15_2983 at 3125.824 kb on - strand, within HP15_2983 at 3125.860 kb on + strand, within HP15_2983 at 3125.990 kb on - strand, within HP15_2983 at 3126.018 kb on - strand, within HP15_2983 at 3126.148 kb on - strand, within HP15_2983 at 3126.148 kb on - strand, within HP15_2983 at 3126.250 kb on - strand, within HP15_2983 at 3126.253 kb on + strand, within HP15_2983 at 3126.261 kb on - strand, within HP15_2983 at 3126.261 kb on - strand, within HP15_2983 at 3126.308 kb on - strand, within HP15_2983 at 3126.375 kb on + strand, within HP15_2983 at 3126.508 kb on + strand, within HP15_2983 at 3126.518 kb on - strand, within HP15_2983 at 3126.593 kb on + strand, within HP15_2983 at 3126.616 kb on - strand, within HP15_2983 at 3126.636 kb on - strand, within HP15_2983 at 3126.652 kb on + strand, within HP15_2983 at 3126.653 kb on - strand, within HP15_2983 at 3126.771 kb on + strand, within HP15_2983 at 3126.802 kb on - strand, within HP15_2983 at 3126.837 kb on + strand at 3126.849 kb on + strand at 3126.920 kb on + strand at 3127.070 kb on + strand at 3127.078 kb on - strand at 3127.078 kb on - strand at 3127.078 kb on - strand at 3127.159 kb on + strand at 3127.448 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 3,124,738 - HP15_2981 0.69 -3.4 3,124,790 + HP15_2981 0.74 -3.0 3,125,077 + -2.4 3,125,126 - +0.2 3,125,132 - -1.7 3,125,240 - HP15_2982 0.35 +0.1 3,125,254 + HP15_2982 0.39 +1.4 3,125,333 + HP15_2982 0.61 +1.0 3,125,394 + HP15_2982 0.78 -1.8 3,125,399 + HP15_2982 0.79 +1.1 3,125,404 + HP15_2982 0.81 +1.7 3,125,445 + -0.7 3,125,471 + +0.2 3,125,588 - +0.9 3,125,628 + -0.5 3,125,638 + +1.1 3,125,638 + -0.3 3,125,638 + -1.5 3,125,638 + +1.3 3,125,638 + -1.3 3,125,638 + -0.6 3,125,638 + +0.9 3,125,646 - +0.7 3,125,646 - -0.4 3,125,646 - -0.4 3,125,646 - -0.6 3,125,646 - -0.5 3,125,665 + -0.7 3,125,673 - +2.1 3,125,675 + -0.5 3,125,683 - -0.8 3,125,683 - -0.3 3,125,683 - -0.1 3,125,685 + +1.1 3,125,713 + HP15_2983 0.11 +0.7 3,125,816 + HP15_2983 0.18 +0.6 3,125,824 - HP15_2983 0.19 -0.9 3,125,824 - HP15_2983 0.19 +0.5 3,125,860 + HP15_2983 0.22 +1.4 3,125,990 - HP15_2983 0.31 -1.1 3,126,018 - HP15_2983 0.33 +1.0 3,126,148 - HP15_2983 0.42 -0.5 3,126,148 - HP15_2983 0.42 +0.1 3,126,250 - HP15_2983 0.49 -2.0 3,126,253 + HP15_2983 0.50 -0.6 3,126,261 - HP15_2983 0.50 -0.1 3,126,261 - HP15_2983 0.50 -0.3 3,126,308 - HP15_2983 0.54 -0.3 3,126,375 + HP15_2983 0.58 +2.0 3,126,508 + HP15_2983 0.68 +0.4 3,126,518 - HP15_2983 0.69 -1.3 3,126,593 + HP15_2983 0.74 +0.0 3,126,616 - HP15_2983 0.76 -0.4 3,126,636 - HP15_2983 0.77 +0.3 3,126,652 + HP15_2983 0.78 +0.8 3,126,653 - HP15_2983 0.78 -0.5 3,126,771 + HP15_2983 0.87 -1.0 3,126,802 - HP15_2983 0.89 -0.5 3,126,837 + -0.2 3,126,849 + +1.4 3,126,920 + +0.3 3,127,070 + -0.4 3,127,078 - -0.4 3,127,078 - +1.5 3,127,078 - -0.6 3,127,159 + +0.0 3,127,448 + +1.7
Or see this region's nucleotide sequence