Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2761 and HP15_2760 overlap by 4 nucleotides HP15_2760 and HP15_2762 overlap by 80 nucleotides HP15_2762 and HP15_2763 are separated by 104 nucleotides HP15_2763 and HP15_2764 are separated by 112 nucleotides
HP15_2761: HP15_2761 - transcriptional regulator, GntR family with aminotransferase domain protein, at 2,914,029 to 2,915,462
_2761
HP15_2760: HP15_2760 - methyltransferase domain family, at 2,915,459 to 2,916,187
_2760
HP15_2762: HP15_2762 - transcriptional regulator, LysR family protein, at 2,916,108 to 2,917,010
_2762
HP15_2763: HP15_2763 - methyltransferase, UbiE/COQ5 family protein, at 2,917,115 to 2,917,747
_2763
HP15_2764: HP15_2764 - membrane protein, at 2,917,860 to 2,918,063
_2764
Position (kb)
2916
2917
2918 Strain fitness (log2 ratio)
-2
-1
0
1 at 2915.193 kb on - strand, within HP15_2761 at 2915.298 kb on - strand, within HP15_2761 at 2915.308 kb on - strand, within HP15_2761 at 2915.366 kb on + strand at 2915.421 kb on - strand at 2915.513 kb on + strand at 2915.513 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.719 kb on + strand, within HP15_2760 at 2915.848 kb on + strand, within HP15_2760 at 2916.027 kb on + strand, within HP15_2760 at 2916.178 kb on - strand at 2916.184 kb on - strand at 2916.227 kb on + strand, within HP15_2762 at 2916.257 kb on + strand, within HP15_2762 at 2916.267 kb on + strand, within HP15_2762 at 2916.280 kb on - strand, within HP15_2762 at 2916.302 kb on - strand, within HP15_2762 at 2916.368 kb on + strand, within HP15_2762 at 2916.438 kb on - strand, within HP15_2762 at 2916.488 kb on - strand, within HP15_2762 at 2916.558 kb on + strand, within HP15_2762 at 2916.613 kb on - strand, within HP15_2762 at 2916.792 kb on + strand, within HP15_2762 at 2917.186 kb on - strand, within HP15_2763 at 2917.408 kb on - strand, within HP15_2763 at 2917.455 kb on + strand, within HP15_2763 at 2917.574 kb on - strand, within HP15_2763 at 2917.596 kb on - strand, within HP15_2763 at 2917.657 kb on - strand, within HP15_2763 at 2917.657 kb on - strand, within HP15_2763 at 2917.751 kb on + strand at 2917.803 kb on - strand at 2917.837 kb on + strand at 2917.867 kb on + strand at 2917.875 kb on - strand at 2917.875 kb on - strand at 2917.913 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 2,915,193 - HP15_2761 0.81 -1.1 2,915,298 - HP15_2761 0.88 +1.3 2,915,308 - HP15_2761 0.89 -0.4 2,915,366 + -0.3 2,915,421 - -0.0 2,915,513 + +0.9 2,915,513 + -0.5 2,915,518 + +0.2 2,915,518 + +1.3 2,915,518 + -0.4 2,915,518 + -0.4 2,915,719 + HP15_2760 0.36 +1.3 2,915,848 + HP15_2760 0.53 -0.5 2,916,027 + HP15_2760 0.78 -0.1 2,916,178 - -0.4 2,916,184 - -0.2 2,916,227 + HP15_2762 0.13 -0.5 2,916,257 + HP15_2762 0.17 -0.4 2,916,267 + HP15_2762 0.18 +0.4 2,916,280 - HP15_2762 0.19 +0.4 2,916,302 - HP15_2762 0.21 -0.9 2,916,368 + HP15_2762 0.29 -0.6 2,916,438 - HP15_2762 0.37 -0.1 2,916,488 - HP15_2762 0.42 -1.1 2,916,558 + HP15_2762 0.50 -0.2 2,916,613 - HP15_2762 0.56 -0.8 2,916,792 + HP15_2762 0.76 +1.5 2,917,186 - HP15_2763 0.11 +1.6 2,917,408 - HP15_2763 0.46 -0.5 2,917,455 + HP15_2763 0.54 -0.1 2,917,574 - HP15_2763 0.73 +0.3 2,917,596 - HP15_2763 0.76 -0.1 2,917,657 - HP15_2763 0.86 +0.4 2,917,657 - HP15_2763 0.86 -2.3 2,917,751 + -0.3 2,917,803 - -0.0 2,917,837 + -0.6 2,917,867 + -0.4 2,917,875 - +0.0 2,917,875 - -0.1 2,917,913 + HP15_2764 0.26 -1.2 2,917,986 + HP15_2764 0.62 +1.4 2,917,986 + HP15_2764 0.62 -0.3 2,917,986 + HP15_2764 0.62 -0.4
Or see this region's nucleotide sequence