Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2553 and HP15_2554 are separated by 154 nucleotides HP15_2554 and HP15_2555 are separated by 66 nucleotides HP15_2555 and HP15_2556 are separated by 38 nucleotides
HP15_2553: HP15_2553 - oxidoreductase, FAD-binding protein, at 2,699,097 to 2,700,536
_2553
HP15_2554: HP15_2554 - D-3-phosphoglycerate dehydrogenase-like protein, at 2,700,691 to 2,701,920
_2554
HP15_2555: HP15_2555 - OmpA/MotB domain protein, at 2,701,987 to 2,702,643
_2555
HP15_2556: HP15_2556 - lysophospholipase, at 2,702,682 to 2,703,689
_2556
Position (kb)
2700
2701
2702 Strain fitness (log2 ratio)
-2
-1
0
1 at 2700.523 kb on - strand at 2702.058 kb on + strand, within HP15_2555 at 2702.103 kb on + strand, within HP15_2555 at 2702.200 kb on - strand, within HP15_2555 at 2702.224 kb on + strand, within HP15_2555 at 2702.269 kb on - strand, within HP15_2555 at 2702.450 kb on + strand, within HP15_2555 at 2702.570 kb on + strand, within HP15_2555 at 2702.577 kb on - strand, within HP15_2555 at 2702.578 kb on - strand at 2702.601 kb on + strand at 2702.653 kb on - strand at 2702.862 kb on - strand, within HP15_2556 at 2702.862 kb on - strand, within HP15_2556 at 2702.871 kb on - strand, within HP15_2556 at 2702.908 kb on + strand, within HP15_2556
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 2,700,523 - +0.2 2,702,058 + HP15_2555 0.11 -2.3 2,702,103 + HP15_2555 0.18 +0.5 2,702,200 - HP15_2555 0.32 +1.0 2,702,224 + HP15_2555 0.36 -1.3 2,702,269 - HP15_2555 0.43 -0.7 2,702,450 + HP15_2555 0.70 -1.6 2,702,570 + HP15_2555 0.89 -0.1 2,702,577 - HP15_2555 0.90 +1.1 2,702,578 - -0.6 2,702,601 + -0.7 2,702,653 - +0.3 2,702,862 - HP15_2556 0.18 -1.6 2,702,862 - HP15_2556 0.18 -0.4 2,702,871 - HP15_2556 0.19 -1.5 2,702,908 + HP15_2556 0.22 -0.6
Or see this region's nucleotide sequence