Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_206 and HP15_207 are separated by 76 nucleotides HP15_207 and HP15_208 are separated by 89 nucleotides HP15_208 and HP15_209 are separated by 9 nucleotides
HP15_206: HP15_206 - Xaa-Pro dipeptidase, at 193,515 to 194,837
_206
HP15_207: HP15_207 - BFD-like (2Fe-2S)-binding region, at 194,914 to 195,120
_207
HP15_208: HP15_208 - bacterioferritin, at 195,210 to 195,686
_208
HP15_209: HP15_209 - phosphomannomutase, at 195,696 to 197,054
_209
Position (kb) 195
196 Strain fitness (log2 ratio) -2
-1
0
1 at 194.295 kb on + strand, within HP15_206 at 194.304 kb on - strand, within HP15_206 at 194.304 kb on - strand, within HP15_206 at 194.348 kb on + strand, within HP15_206 at 194.348 kb on + strand, within HP15_206 at 194.356 kb on - strand, within HP15_206 at 194.357 kb on - strand, within HP15_206 at 194.379 kb on - strand, within HP15_206 at 194.522 kb on + strand, within HP15_206 at 194.537 kb on + strand, within HP15_206 at 194.637 kb on - strand, within HP15_206 at 194.792 kb on + strand at 194.823 kb on - strand at 194.922 kb on - strand at 194.936 kb on + strand, within HP15_207 at 195.163 kb on + strand at 195.177 kb on - strand at 195.249 kb on + strand at 195.525 kb on + strand, within HP15_208 at 195.556 kb on + strand, within HP15_208 at 195.702 kb on - strand at 195.762 kb on - strand at 195.829 kb on - strand at 195.868 kb on + strand, within HP15_209 at 195.922 kb on - strand, within HP15_209 at 195.927 kb on - strand, within HP15_209 at 195.929 kb on + strand, within HP15_209 at 195.967 kb on + strand, within HP15_209 at 196.007 kb on - strand, within HP15_209 at 196.024 kb on + strand, within HP15_209 at 196.080 kb on - strand, within HP15_209 at 196.127 kb on + strand, within HP15_209 at 196.482 kb on + strand, within HP15_209 at 196.516 kb on - strand, within HP15_209 at 196.643 kb on - strand, within HP15_209
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 194,295 + HP15_206 0.59 -0.7 194,304 - HP15_206 0.60 +1.1 194,304 - HP15_206 0.60 +0.5 194,348 + HP15_206 0.63 -0.6 194,348 + HP15_206 0.63 +1.5 194,356 - HP15_206 0.64 -0.8 194,357 - HP15_206 0.64 -0.2 194,379 - HP15_206 0.65 +0.1 194,522 + HP15_206 0.76 +0.6 194,537 + HP15_206 0.77 +1.3 194,637 - HP15_206 0.85 -0.9 194,792 + -0.9 194,823 - +1.6 194,922 - +0.7 194,936 + HP15_207 0.11 -2.1 195,163 + -0.4 195,177 - +0.8 195,249 + -1.2 195,525 + HP15_208 0.66 -0.7 195,556 + HP15_208 0.73 -1.4 195,702 - -0.9 195,762 - -0.9 195,829 - -0.9 195,868 + HP15_209 0.13 -1.5 195,922 - HP15_209 0.17 -0.2 195,927 - HP15_209 0.17 -0.4 195,929 + HP15_209 0.17 -0.1 195,967 + HP15_209 0.20 -0.8 196,007 - HP15_209 0.23 -0.7 196,024 + HP15_209 0.24 +0.9 196,080 - HP15_209 0.28 +0.1 196,127 + HP15_209 0.32 +0.3 196,482 + HP15_209 0.58 -0.4 196,516 - HP15_209 0.60 -1.8 196,643 - HP15_209 0.70 -0.8
Or see this region's nucleotide sequence