Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1972 and HP15_1973 overlap by 11 nucleotides HP15_1973 and HP15_1974 are separated by 1 nucleotides HP15_1974 and HP15_1975 overlap by 4 nucleotides HP15_1975 and HP15_1976 are separated by 107 nucleotides
HP15_1972: HP15_1972 - fibronectin, type III domain protein-like protein, at 2,089,769 to 2,090,875
_1972
HP15_1973: HP15_1973 - hypothetical protein, at 2,090,865 to 2,090,984
_1973
HP15_1974: HP15_1974 - hypothetical protein, at 2,090,986 to 2,091,447
_1974
HP15_1975: HP15_1975 - conserved hypothetical protein, at 2,091,444 to 2,091,581
_1975
HP15_1976: HP15_1976 - hypothetical protein, at 2,091,689 to 2,092,069
_1976
Position (kb)
2090
2091 Strain fitness (log2 ratio)
-1
0
1
2 at 2089.885 kb on + strand, within HP15_1972 at 2089.893 kb on - strand, within HP15_1972 at 2089.893 kb on - strand, within HP15_1972 at 2089.968 kb on + strand, within HP15_1972 at 2090.083 kb on + strand, within HP15_1972 at 2090.083 kb on + strand, within HP15_1972 at 2090.083 kb on + strand, within HP15_1972 at 2090.091 kb on - strand, within HP15_1972 at 2090.091 kb on - strand, within HP15_1972 at 2090.124 kb on - strand, within HP15_1972 at 2090.344 kb on + strand, within HP15_1972 at 2090.362 kb on - strand, within HP15_1972 at 2090.559 kb on - strand, within HP15_1972 at 2090.573 kb on + strand, within HP15_1972 at 2090.695 kb on - strand, within HP15_1972 at 2090.775 kb on + strand at 2090.777 kb on + strand at 2090.783 kb on - strand at 2090.783 kb on - strand at 2090.783 kb on - strand at 2090.809 kb on - strand at 2090.828 kb on - strand at 2090.931 kb on - strand, within HP15_1973 at 2090.958 kb on + strand, within HP15_1973 at 2091.104 kb on + strand, within HP15_1974 at 2091.241 kb on - strand, within HP15_1974 at 2091.252 kb on + strand, within HP15_1974 at 2091.463 kb on + strand, within HP15_1975 at 2091.471 kb on - strand, within HP15_1975 at 2091.615 kb on + strand at 2091.660 kb on + strand at 2091.665 kb on + strand at 2091.673 kb on - strand at 2091.738 kb on + strand, within HP15_1976 at 2091.738 kb on + strand, within HP15_1976 at 2091.738 kb on + strand, within HP15_1976 at 2091.787 kb on + strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.807 kb on + strand, within HP15_1976 at 2091.975 kb on + strand, within HP15_1976 at 2091.975 kb on + strand, within HP15_1976 at 2091.975 kb on + strand, within HP15_1976 at 2091.976 kb on - strand, within HP15_1976 at 2091.983 kb on - strand, within HP15_1976
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 2,089,885 + HP15_1972 0.10 +1.2 2,089,893 - HP15_1972 0.11 +0.3 2,089,893 - HP15_1972 0.11 +1.2 2,089,968 + HP15_1972 0.18 +1.3 2,090,083 + HP15_1972 0.28 -0.3 2,090,083 + HP15_1972 0.28 -0.2 2,090,083 + HP15_1972 0.28 +0.6 2,090,091 - HP15_1972 0.29 -1.3 2,090,091 - HP15_1972 0.29 +1.5 2,090,124 - HP15_1972 0.32 +0.5 2,090,344 + HP15_1972 0.52 -1.4 2,090,362 - HP15_1972 0.54 +1.2 2,090,559 - HP15_1972 0.71 +0.0 2,090,573 + HP15_1972 0.73 +1.1 2,090,695 - HP15_1972 0.84 -0.9 2,090,775 + -1.3 2,090,777 + +0.0 2,090,783 - +0.0 2,090,783 - -0.7 2,090,783 - +0.2 2,090,809 - +1.4 2,090,828 - -0.6 2,090,931 - HP15_1973 0.55 -0.8 2,090,958 + HP15_1973 0.78 -1.4 2,091,104 + HP15_1974 0.26 -1.1 2,091,241 - HP15_1974 0.55 +1.4 2,091,252 + HP15_1974 0.58 +1.7 2,091,463 + HP15_1975 0.14 +0.6 2,091,471 - HP15_1975 0.20 +1.3 2,091,615 + +1.1 2,091,660 + -0.4 2,091,665 + +1.9 2,091,673 - +0.7 2,091,738 + HP15_1976 0.13 -1.2 2,091,738 + HP15_1976 0.13 +0.3 2,091,738 + HP15_1976 0.13 -0.4 2,091,787 + HP15_1976 0.26 -0.3 2,091,795 - HP15_1976 0.28 -0.6 2,091,795 - HP15_1976 0.28 +0.3 2,091,795 - HP15_1976 0.28 +1.2 2,091,795 - HP15_1976 0.28 -0.1 2,091,807 + HP15_1976 0.31 -0.1 2,091,975 + HP15_1976 0.75 +0.7 2,091,975 + HP15_1976 0.75 +0.8 2,091,975 + HP15_1976 0.75 +0.6 2,091,976 - HP15_1976 0.75 -0.9 2,091,983 - HP15_1976 0.77 +0.6
Or see this region's nucleotide sequence