Strain Fitness in Marinobacter adhaerens HP15 around HP15_1860

Experiment: monoculture; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1859 and HP15_1860 are separated by 29 nucleotidesHP15_1860 and HP15_1861 are separated by 143 nucleotidesHP15_1861 and HP15_1862 are separated by 12 nucleotides HP15_1859: HP15_1859 - patatin-like phospholipase domain-containing protein, at 1,961,853 to 1,963,340 _1859 HP15_1860: HP15_1860 - VacJ family lipoprotein, at 1,963,370 to 1,964,161 _1860 HP15_1861: HP15_1861 - thioesterase superfamily protein, at 1,964,305 to 1,964,655 _1861 HP15_1862: HP15_1862 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,964,668 to 1,965,789 _1862 Position (kb) 1963 1964 1965Strain fitness (log2 ratio) -2 -1 0 1at 1962.423 kb on - strand, within HP15_1859at 1962.480 kb on + strand, within HP15_1859at 1962.495 kb on + strand, within HP15_1859at 1962.549 kb on + strand, within HP15_1859at 1962.778 kb on - strand, within HP15_1859at 1962.811 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.011 kb on - strand, within HP15_1859at 1963.011 kb on - strand, within HP15_1859at 1963.016 kb on - strand, within HP15_1859at 1963.059 kb on + strand, within HP15_1859at 1963.059 kb on + strand, within HP15_1859at 1963.067 kb on - strand, within HP15_1859at 1963.105 kb on - strand, within HP15_1859at 1963.106 kb on - strand, within HP15_1859at 1963.113 kb on - strand, within HP15_1859at 1963.115 kb on - strand, within HP15_1859at 1963.267 kb on + strandat 1963.348 kb on - strandat 1963.637 kb on + strand, within HP15_1860at 1963.637 kb on + strand, within HP15_1860at 1963.749 kb on - strand, within HP15_1860at 1963.777 kb on + strand, within HP15_1860at 1963.777 kb on + strand, within HP15_1860at 1963.784 kb on + strand, within HP15_1860at 1963.867 kb on + strand, within HP15_1860at 1964.035 kb on - strand, within HP15_1860at 1964.249 kb on + strandat 1964.274 kb on + strandat 1964.284 kb on - strandat 1964.343 kb on - strand, within HP15_1861at 1964.381 kb on + strand, within HP15_1861at 1964.425 kb on + strand, within HP15_1861at 1964.503 kb on + strand, within HP15_1861at 1964.808 kb on + strand, within HP15_1862at 1964.855 kb on + strand, within HP15_1862at 1964.856 kb on - strand, within HP15_1862at 1964.882 kb on - strand, within HP15_1862at 1965.128 kb on + strand, within HP15_1862

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
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1,962,423 - HP15_1859 0.38 -0.7
1,962,480 + HP15_1859 0.42 -0.8
1,962,495 + HP15_1859 0.43 -0.3
1,962,549 + HP15_1859 0.47 +1.3
1,962,778 - HP15_1859 0.62 +1.4
1,962,811 + HP15_1859 0.64 -0.6
1,963,003 + HP15_1859 0.77 +0.5
1,963,003 + HP15_1859 0.77 -0.3
1,963,003 + HP15_1859 0.77 +0.1
1,963,003 + HP15_1859 0.77 -1.2
1,963,003 + HP15_1859 0.77 -0.5
1,963,003 + HP15_1859 0.77 -0.3
1,963,003 + HP15_1859 0.77 -1.3
1,963,003 + HP15_1859 0.77 -1.0
1,963,011 - HP15_1859 0.78 -1.0
1,963,011 - HP15_1859 0.78 +1.3
1,963,016 - HP15_1859 0.78 -0.4
1,963,059 + HP15_1859 0.81 +0.2
1,963,059 + HP15_1859 0.81 -0.2
1,963,067 - HP15_1859 0.82 -2.6
1,963,105 - HP15_1859 0.84 -0.1
1,963,106 - HP15_1859 0.84 +1.2
1,963,113 - HP15_1859 0.85 -0.9
1,963,115 - HP15_1859 0.85 -0.3
1,963,267 + -0.6
1,963,348 - -0.3
1,963,637 + HP15_1860 0.34 -2.3
1,963,637 + HP15_1860 0.34 -1.9
1,963,749 - HP15_1860 0.48 -1.8
1,963,777 + HP15_1860 0.51 -1.4
1,963,777 + HP15_1860 0.51 -0.7
1,963,784 + HP15_1860 0.52 -1.7
1,963,867 + HP15_1860 0.63 +0.3
1,964,035 - HP15_1860 0.84 -1.3
1,964,249 + -0.8
1,964,274 + -1.0
1,964,284 - +1.3
1,964,343 - HP15_1861 0.11 -0.1
1,964,381 + HP15_1861 0.22 -0.5
1,964,425 + HP15_1861 0.34 +1.3
1,964,503 + HP15_1861 0.56 +1.2
1,964,808 + HP15_1862 0.12 -0.1
1,964,855 + HP15_1862 0.17 +0.4
1,964,856 - HP15_1862 0.17 -0.2
1,964,882 - HP15_1862 0.19 -0.7
1,965,128 + HP15_1862 0.41 +0.4

Or see this region's nucleotide sequence