Strain Fitness in Marinobacter adhaerens HP15 around HP15_188

Experiment: monoculture; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_186 and HP15_187 are separated by 163 nucleotidesHP15_187 and HP15_188 are separated by 129 nucleotidesHP15_188 and HP15_189 are separated by 15 nucleotidesHP15_189 and HP15_190 are separated by 240 nucleotides HP15_186: HP15_186 - two-component sensor, at 176,240 to 177,595 _186 HP15_187: HP15_187 - conserved hypothetical protein, secreted, at 177,759 to 178,142 _187 HP15_188: HP15_188 - plasmid pTOM9 ORF1-like protein, at 178,272 to 178,925 _188 HP15_189: HP15_189 - plasmidpTOM9-like protein, at 178,941 to 179,636 _189 HP15_190: HP15_190 - protein containing methyltransferase type 12 domain, at 179,877 to 180,323 _190 Position (kb) 178 179Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 177.293 kb on + strand, within HP15_186at 177.293 kb on + strand, within HP15_186at 177.293 kb on + strand, within HP15_186at 177.323 kb on - strand, within HP15_186at 177.325 kb on + strand, within HP15_186at 177.335 kb on - strand, within HP15_186at 177.337 kb on - strand, within HP15_186at 177.352 kb on + strand, within HP15_186at 177.360 kb on - strand, within HP15_186at 177.360 kb on - strand, within HP15_186at 177.362 kb on - strand, within HP15_186at 177.465 kb on + strandat 177.473 kb on - strandat 177.473 kb on - strandat 177.499 kb on + strandat 177.563 kb on + strandat 177.604 kb on + strandat 177.651 kb on + strandat 177.655 kb on - strandat 177.686 kb on - strandat 177.693 kb on + strandat 177.693 kb on + strandat 177.695 kb on - strandat 177.701 kb on - strandat 177.713 kb on - strandat 177.720 kb on - strandat 177.720 kb on - strandat 177.720 kb on - strandat 177.862 kb on + strand, within HP15_187at 177.868 kb on - strand, within HP15_187at 177.916 kb on + strand, within HP15_187at 177.922 kb on - strand, within HP15_187at 177.924 kb on - strand, within HP15_187at 177.962 kb on + strand, within HP15_187at 177.964 kb on + strand, within HP15_187at 178.016 kb on + strand, within HP15_187at 178.051 kb on + strand, within HP15_187at 178.181 kb on - strandat 178.253 kb on + strandat 178.283 kb on - strandat 178.320 kb on - strandat 178.360 kb on + strand, within HP15_188at 178.496 kb on - strand, within HP15_188at 178.583 kb on + strand, within HP15_188at 178.590 kb on + strand, within HP15_188at 178.629 kb on - strand, within HP15_188at 178.678 kb on + strand, within HP15_188at 178.686 kb on - strand, within HP15_188at 178.734 kb on - strand, within HP15_188at 178.747 kb on + strand, within HP15_188at 178.863 kb on + strandat 178.863 kb on + strandat 178.863 kb on + strandat 178.956 kb on + strandat 179.036 kb on + strand, within HP15_189at 179.076 kb on - strand, within HP15_189at 179.163 kb on + strand, within HP15_189at 179.176 kb on - strand, within HP15_189at 179.183 kb on + strand, within HP15_189at 179.191 kb on - strand, within HP15_189at 179.191 kb on - strand, within HP15_189at 179.285 kb on + strand, within HP15_189at 179.293 kb on - strand, within HP15_189at 179.418 kb on + strand, within HP15_189at 179.424 kb on - strand, within HP15_189at 179.424 kb on - strand, within HP15_189at 179.441 kb on + strand, within HP15_189at 179.537 kb on - strand, within HP15_189at 179.592 kb on - strandat 179.609 kb on - strandat 179.648 kb on - strandat 179.700 kb on - strandat 179.769 kb on + strandat 179.787 kb on - strandat 179.834 kb on - strandat 179.901 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
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177,293 + HP15_186 0.78 +1.6
177,293 + HP15_186 0.78 -0.7
177,293 + HP15_186 0.78 +0.2
177,323 - HP15_186 0.80 -0.8
177,325 + HP15_186 0.80 +1.1
177,335 - HP15_186 0.81 -2.0
177,337 - HP15_186 0.81 -0.6
177,352 + HP15_186 0.82 -0.6
177,360 - HP15_186 0.83 +1.3
177,360 - HP15_186 0.83 +0.4
177,362 - HP15_186 0.83 -2.4
177,465 + -1.6
177,473 - +0.8
177,473 - -0.3
177,499 + +1.4
177,563 + -0.3
177,604 + -0.1
177,651 + -0.5
177,655 - +1.3
177,686 - -0.4
177,693 + -0.7
177,693 + -1.0
177,695 - +0.1
177,701 - +0.8
177,713 - -0.5
177,720 - +1.0
177,720 - -0.0
177,720 - +0.4
177,862 + HP15_187 0.27 +0.5
177,868 - HP15_187 0.28 -1.4
177,916 + HP15_187 0.41 +0.1
177,922 - HP15_187 0.42 -0.4
177,924 - HP15_187 0.43 -0.0
177,962 + HP15_187 0.53 +2.2
177,964 + HP15_187 0.53 +1.5
178,016 + HP15_187 0.67 -0.0
178,051 + HP15_187 0.76 +0.1
178,181 - -1.0
178,253 + -1.2
178,283 - +1.3
178,320 - +0.2
178,360 + HP15_188 0.13 +0.1
178,496 - HP15_188 0.34 +0.4
178,583 + HP15_188 0.48 +1.1
178,590 + HP15_188 0.49 +1.1
178,629 - HP15_188 0.55 -0.4
178,678 + HP15_188 0.62 +1.0
178,686 - HP15_188 0.63 +1.0
178,734 - HP15_188 0.71 -0.1
178,747 + HP15_188 0.73 +0.8
178,863 + +1.9
178,863 + -0.3
178,863 + +1.2
178,956 + +1.3
179,036 + HP15_189 0.14 -0.3
179,076 - HP15_189 0.19 -0.7
179,163 + HP15_189 0.32 -0.8
179,176 - HP15_189 0.34 -2.7
179,183 + HP15_189 0.35 -1.7
179,191 - HP15_189 0.36 +0.3
179,191 - HP15_189 0.36 -1.4
179,285 + HP15_189 0.49 -1.9
179,293 - HP15_189 0.51 -0.4
179,418 + HP15_189 0.69 -0.2
179,424 - HP15_189 0.69 -0.0
179,424 - HP15_189 0.69 +0.9
179,441 + HP15_189 0.72 +0.6
179,537 - HP15_189 0.86 +0.4
179,592 - +0.4
179,609 - +0.0
179,648 - +0.5
179,700 - -1.2
179,769 + +2.0
179,787 - -3.2
179,834 - -1.7
179,901 + -2.4

Or see this region's nucleotide sequence