Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1503 and HP15_1504 are separated by 53 nucleotides HP15_1504 and HP15_1505 are separated by 103 nucleotides HP15_1505 and HP15_1506 are separated by 145 nucleotides
HP15_1503: HP15_1503 - nucleoside-diphosphate sugar epimerase, at 1,579,904 to 1,580,830
_1503
HP15_1504: HP15_1504 - cobalamin (vitamin B12) biosynthesis CbiX protein, at 1,580,884 to 1,581,258
_1504
HP15_1505: HP15_1505 - protein containing DUF924, bacterial, at 1,581,362 to 1,581,964
_1505
HP15_1506: HP15_1506 - secreted protein containing YkuD domain, at 1,582,110 to 1,583,147
_1506
Position (kb)
1580
1581
1582 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1579.952 kb on - strand at 1579.954 kb on + strand at 1580.096 kb on + strand, within HP15_1503 at 1580.096 kb on + strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.175 kb on - strand, within HP15_1503 at 1580.210 kb on + strand, within HP15_1503 at 1580.278 kb on + strand, within HP15_1503 at 1580.361 kb on - strand, within HP15_1503 at 1580.540 kb on - strand, within HP15_1503 at 1580.600 kb on + strand, within HP15_1503 at 1580.839 kb on + strand at 1580.867 kb on + strand at 1581.132 kb on + strand, within HP15_1504 at 1581.466 kb on - strand, within HP15_1505 at 1581.473 kb on - strand at 1581.665 kb on - strand, within HP15_1505 at 1581.674 kb on + strand, within HP15_1505 at 1581.739 kb on + strand, within HP15_1505 at 1581.754 kb on + strand, within HP15_1505 at 1581.798 kb on + strand, within HP15_1505 at 1581.959 kb on + strand at 1581.959 kb on - strand at 1581.969 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 1,579,952 - -0.5 1,579,954 + +0.0 1,580,096 + HP15_1503 0.21 -0.2 1,580,096 + HP15_1503 0.21 +1.2 1,580,175 - HP15_1503 0.29 -0.7 1,580,175 - HP15_1503 0.29 -0.5 1,580,175 - HP15_1503 0.29 +0.3 1,580,175 - HP15_1503 0.29 -2.2 1,580,210 + HP15_1503 0.33 -1.1 1,580,278 + HP15_1503 0.40 -1.0 1,580,361 - HP15_1503 0.49 -0.4 1,580,540 - HP15_1503 0.69 +1.5 1,580,600 + HP15_1503 0.75 +1.1 1,580,839 + +0.0 1,580,867 + -0.1 1,581,132 + HP15_1504 0.66 -5.1 1,581,466 - HP15_1505 0.17 +0.1 1,581,473 - +0.3 1,581,665 - HP15_1505 0.50 -0.7 1,581,674 + HP15_1505 0.52 +1.1 1,581,739 + HP15_1505 0.63 -0.1 1,581,754 + HP15_1505 0.65 +1.0 1,581,798 + HP15_1505 0.72 +1.1 1,581,959 + +1.0 1,581,959 - +1.3 1,581,969 + -1.1
Or see this region's nucleotide sequence