Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1426 and HP15_1427 are separated by 132 nucleotides HP15_1427 and HP15_1428 overlap by 8 nucleotides HP15_1428 and HP15_1429 are separated by 255 nucleotides HP15_1429 and HP15_1430 are separated by 65 nucleotides
HP15_1426: HP15_1426 - 6-aminohexanoate-dimer hydrolase, at 1,507,943 to 1,508,941
_1426
HP15_1427: HP15_1427 - protein belonging to uncharacterized protein family UPF0060, at 1,509,074 to 1,509,406
_1427
HP15_1428: HP15_1428 - hypothetical protein, at 1,509,399 to 1,509,590
_1428
HP15_1429: HP15_1429 - DinB family protein, at 1,509,846 to 1,510,388
_1429
HP15_1430: HP15_1430 - glutathione S-transferase family protein, at 1,510,454 to 1,511,050
_1430
Position (kb)
1509
1510
1511 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1508.903 kb on + strand at 1508.941 kb on - strand at 1508.943 kb on + strand at 1508.951 kb on - strand at 1509.032 kb on - strand at 1509.126 kb on - strand, within HP15_1427 at 1509.197 kb on + strand, within HP15_1427 at 1509.205 kb on - strand, within HP15_1427 at 1509.217 kb on - strand, within HP15_1427 at 1509.286 kb on - strand, within HP15_1427 at 1509.483 kb on + strand, within HP15_1428 at 1509.484 kb on - strand, within HP15_1428 at 1509.510 kb on - strand, within HP15_1428 at 1509.603 kb on + strand at 1509.618 kb on + strand at 1509.626 kb on - strand at 1509.649 kb on + strand at 1509.757 kb on - strand at 1509.763 kb on + strand at 1509.856 kb on + strand at 1509.868 kb on - strand at 1509.910 kb on + strand, within HP15_1429 at 1509.920 kb on + strand, within HP15_1429 at 1510.003 kb on + strand, within HP15_1429 at 1510.011 kb on - strand, within HP15_1429 at 1510.135 kb on - strand, within HP15_1429 at 1510.152 kb on + strand, within HP15_1429 at 1510.301 kb on + strand, within HP15_1429 at 1510.459 kb on - strand at 1510.459 kb on - strand at 1510.515 kb on + strand, within HP15_1430 at 1510.523 kb on - strand, within HP15_1430 at 1510.584 kb on + strand, within HP15_1430 at 1510.584 kb on + strand, within HP15_1430 at 1510.625 kb on + strand, within HP15_1430 at 1510.787 kb on + strand, within HP15_1430 at 1510.787 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.824 kb on - strand, within HP15_1430 at 1510.856 kb on - strand, within HP15_1430 at 1510.872 kb on + strand, within HP15_1430 at 1511.029 kb on + strand at 1511.054 kb on + strand at 1511.145 kb on + strand at 1511.153 kb on - strand at 1511.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 1,508,903 + +1.3 1,508,941 - +1.2 1,508,943 + -1.4 1,508,951 - -0.3 1,509,032 - -0.2 1,509,126 - HP15_1427 0.16 -0.3 1,509,197 + HP15_1427 0.37 -1.0 1,509,205 - HP15_1427 0.39 +0.4 1,509,217 - HP15_1427 0.43 +1.4 1,509,286 - HP15_1427 0.64 -0.7 1,509,483 + HP15_1428 0.44 -3.0 1,509,484 - HP15_1428 0.44 -1.3 1,509,510 - HP15_1428 0.58 +0.1 1,509,603 + -1.0 1,509,618 + +0.2 1,509,626 - +1.0 1,509,649 + -0.8 1,509,757 - -1.3 1,509,763 + -0.8 1,509,856 + +0.2 1,509,868 - -0.8 1,509,910 + HP15_1429 0.12 -0.2 1,509,920 + HP15_1429 0.14 -0.1 1,510,003 + HP15_1429 0.29 +0.9 1,510,011 - HP15_1429 0.30 -0.2 1,510,135 - HP15_1429 0.53 -0.4 1,510,152 + HP15_1429 0.56 +1.4 1,510,301 + HP15_1429 0.84 -0.8 1,510,459 - -0.5 1,510,459 - -0.5 1,510,515 + HP15_1430 0.10 +1.0 1,510,523 - HP15_1430 0.12 +1.3 1,510,584 + HP15_1430 0.22 -1.1 1,510,584 + HP15_1430 0.22 -0.0 1,510,625 + HP15_1430 0.29 -0.5 1,510,787 + HP15_1430 0.56 -0.5 1,510,787 + HP15_1430 0.56 +0.4 1,510,816 + HP15_1430 0.61 +1.2 1,510,816 + HP15_1430 0.61 +0.1 1,510,816 + HP15_1430 0.61 +1.2 1,510,816 + HP15_1430 0.61 +1.4 1,510,824 - HP15_1430 0.62 +1.2 1,510,856 - HP15_1430 0.67 +0.1 1,510,872 + HP15_1430 0.70 -0.8 1,511,029 + -1.3 1,511,054 + +0.4 1,511,145 + -0.3 1,511,153 - +0.8 1,511,257 - -0.2
Or see this region's nucleotide sequence