Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1331 and HP15_1332 are separated by 25 nucleotides HP15_1332 and HP15_1333 are separated by 49 nucleotides
HP15_1331: HP15_1331 - pyruvate carboxylase subunit B, at 1,395,991 to 1,397,778
_1331
HP15_1332: HP15_1332 - sodium ion-translocating decarboxylase, beta subunit, at 1,397,804 to 1,399,126
_1332
HP15_1333: HP15_1333 - error-prone DNA polymerase, at 1,399,176 to 1,402,295
_1333
Position (kb)
1397
1398
1399
1400 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 1397.365 kb on - strand, within HP15_1331 at 1397.427 kb on + strand, within HP15_1331 at 1397.435 kb on - strand, within HP15_1331 at 1398.061 kb on - strand, within HP15_1332 at 1398.154 kb on + strand, within HP15_1332 at 1398.162 kb on - strand, within HP15_1332 at 1398.192 kb on - strand, within HP15_1332 at 1398.213 kb on - strand, within HP15_1332 at 1398.365 kb on + strand, within HP15_1332 at 1398.365 kb on + strand, within HP15_1332 at 1398.575 kb on - strand, within HP15_1332 at 1398.659 kb on + strand, within HP15_1332 at 1398.712 kb on + strand, within HP15_1332 at 1398.720 kb on - strand, within HP15_1332 at 1398.763 kb on - strand, within HP15_1332 at 1398.772 kb on - strand, within HP15_1332 at 1398.951 kb on - strand, within HP15_1332 at 1399.339 kb on - strand at 1399.410 kb on + strand at 1399.549 kb on + strand, within HP15_1333 at 1399.562 kb on - strand, within HP15_1333 at 1399.610 kb on + strand, within HP15_1333 at 1399.641 kb on + strand, within HP15_1333 at 1399.658 kb on + strand, within HP15_1333 at 1399.678 kb on - strand, within HP15_1333 at 1399.704 kb on - strand, within HP15_1333 at 1399.771 kb on - strand, within HP15_1333 at 1399.829 kb on - strand, within HP15_1333 at 1400.001 kb on - strand, within HP15_1333 at 1400.029 kb on + strand, within HP15_1333 at 1400.031 kb on + strand, within HP15_1333 at 1400.037 kb on - strand, within HP15_1333
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 1,397,365 - HP15_1331 0.77 -7.1 1,397,427 + HP15_1331 0.80 -2.9 1,397,435 - HP15_1331 0.81 -2.6 1,398,061 - HP15_1332 0.19 -4.3 1,398,154 + HP15_1332 0.26 -5.9 1,398,162 - HP15_1332 0.27 -2.9 1,398,192 - HP15_1332 0.29 -0.2 1,398,213 - HP15_1332 0.31 -4.1 1,398,365 + HP15_1332 0.42 -4.9 1,398,365 + HP15_1332 0.42 -4.0 1,398,575 - HP15_1332 0.58 -4.0 1,398,659 + HP15_1332 0.65 -3.4 1,398,712 + HP15_1332 0.69 -2.8 1,398,720 - HP15_1332 0.69 -1.9 1,398,763 - HP15_1332 0.72 -4.0 1,398,772 - HP15_1332 0.73 -4.3 1,398,951 - HP15_1332 0.87 -3.2 1,399,339 - -1.0 1,399,410 + +0.7 1,399,549 + HP15_1333 0.12 -0.2 1,399,562 - HP15_1333 0.12 -0.4 1,399,610 + HP15_1333 0.14 +2.4 1,399,641 + HP15_1333 0.15 -1.4 1,399,658 + HP15_1333 0.15 -0.3 1,399,678 - HP15_1333 0.16 -0.6 1,399,704 - HP15_1333 0.17 -0.5 1,399,771 - HP15_1333 0.19 +0.3 1,399,829 - HP15_1333 0.21 +0.7 1,400,001 - HP15_1333 0.26 -0.9 1,400,029 + HP15_1333 0.27 +0.4 1,400,031 + HP15_1333 0.27 -0.0 1,400,037 - HP15_1333 0.28 +1.1
Or see this region's nucleotide sequence