Strain Fitness in Marinobacter adhaerens HP15 around HP15_1180

Experiment: monoculture; Experiment A, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1179 and HP15_1180 overlap by 1 nucleotidesHP15_1180 and HP15_tRNA18 are separated by 69 nucleotidesHP15_tRNA18 and HP15_1181 are separated by 440 nucleotidesHP15_1181 and HP15_1182 are separated by 44 nucleotidesHP15_1182 and HP15_1183 are separated by 31 nucleotides HP15_1179: HP15_1179 - lipid-A-disaccharide synthase, at 1,211,734 to 1,212,915 _1179 HP15_1180: HP15_1180 - ribonuclease HII, at 1,212,915 to 1,213,601 _1180 HP15_tRNA18: HP15_tRNA18 - tRNA-Met, at 1,213,671 to 1,213,747 _tRNA18 HP15_1181: HP15_1181 - hypothetical protein, at 1,214,188 to 1,214,301 _1181 HP15_1182: HP15_1182 - ribonuclease HII-like protein, at 1,214,346 to 1,214,561 _1182 HP15_1183: HP15_1183 - signal transduction histidine kinase with CHASE2 and PAS sensor domains, at 1,214,593 to 1,217,160 _1183 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -2 -1 0 1at 1213.009 kb on - strand, within HP15_1180at 1213.018 kb on - strand, within HP15_1180at 1213.051 kb on + strand, within HP15_1180at 1213.187 kb on + strand, within HP15_1180at 1213.207 kb on + strand, within HP15_1180at 1213.275 kb on - strand, within HP15_1180at 1213.405 kb on + strand, within HP15_1180at 1213.423 kb on - strand, within HP15_1180at 1213.471 kb on + strand, within HP15_1180at 1213.479 kb on - strand, within HP15_1180at 1213.490 kb on + strand, within HP15_1180at 1213.509 kb on - strand, within HP15_1180at 1213.581 kb on - strandat 1213.777 kb on + strandat 1213.886 kb on - strandat 1214.026 kb on + strandat 1214.229 kb on + strand, within HP15_1181at 1214.570 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
remove
1,213,009 - HP15_1180 0.14 -0.4
1,213,018 - HP15_1180 0.15 +0.5
1,213,051 + HP15_1180 0.20 -0.2
1,213,187 + HP15_1180 0.40 -0.2
1,213,207 + HP15_1180 0.43 +0.6
1,213,275 - HP15_1180 0.52 -2.3
1,213,405 + HP15_1180 0.71 +0.9
1,213,423 - HP15_1180 0.74 -0.4
1,213,471 + HP15_1180 0.81 -0.6
1,213,479 - HP15_1180 0.82 -0.4
1,213,490 + HP15_1180 0.84 -0.8
1,213,509 - HP15_1180 0.86 -1.2
1,213,581 - -0.0
1,213,777 + -0.6
1,213,886 - -2.0
1,214,026 + +1.2
1,214,229 + HP15_1181 0.36 +0.6
1,214,570 - +1.4

Or see this region's nucleotide sequence