Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1179 and HP15_1180 overlap by 1 nucleotides HP15_1180 and HP15_tRNA18 are separated by 69 nucleotides HP15_tRNA18 and HP15_1181 are separated by 440 nucleotides HP15_1181 and HP15_1182 are separated by 44 nucleotides HP15_1182 and HP15_1183 are separated by 31 nucleotides
HP15_1179: HP15_1179 - lipid-A-disaccharide synthase, at 1,211,734 to 1,212,915
_1179
HP15_1180: HP15_1180 - ribonuclease HII, at 1,212,915 to 1,213,601
_1180
HP15_tRNA18: HP15_tRNA18 - tRNA-Met, at 1,213,671 to 1,213,747
_tRNA18
HP15_1181: HP15_1181 - hypothetical protein, at 1,214,188 to 1,214,301
_1181
HP15_1182: HP15_1182 - ribonuclease HII-like protein, at 1,214,346 to 1,214,561
_1182
HP15_1183: HP15_1183 - signal transduction histidine kinase with CHASE2 and PAS sensor domains, at 1,214,593 to 1,217,160
_1183
Position (kb)
1212
1213
1214 Strain fitness (log2 ratio)
-2
-1
0
1 at 1213.009 kb on - strand, within HP15_1180 at 1213.018 kb on - strand, within HP15_1180 at 1213.051 kb on + strand, within HP15_1180 at 1213.187 kb on + strand, within HP15_1180 at 1213.207 kb on + strand, within HP15_1180 at 1213.275 kb on - strand, within HP15_1180 at 1213.405 kb on + strand, within HP15_1180 at 1213.423 kb on - strand, within HP15_1180 at 1213.471 kb on + strand, within HP15_1180 at 1213.479 kb on - strand, within HP15_1180 at 1213.490 kb on + strand, within HP15_1180 at 1213.509 kb on - strand, within HP15_1180 at 1213.581 kb on - strand at 1213.777 kb on + strand at 1213.886 kb on - strand at 1214.026 kb on + strand at 1214.229 kb on + strand, within HP15_1181 at 1214.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 1,213,009 - HP15_1180 0.14 -0.4 1,213,018 - HP15_1180 0.15 +0.5 1,213,051 + HP15_1180 0.20 -0.2 1,213,187 + HP15_1180 0.40 -0.2 1,213,207 + HP15_1180 0.43 +0.6 1,213,275 - HP15_1180 0.52 -2.3 1,213,405 + HP15_1180 0.71 +0.9 1,213,423 - HP15_1180 0.74 -0.4 1,213,471 + HP15_1180 0.81 -0.6 1,213,479 - HP15_1180 0.82 -0.4 1,213,490 + HP15_1180 0.84 -0.8 1,213,509 - HP15_1180 0.86 -1.2 1,213,581 - -0.0 1,213,777 + -0.6 1,213,886 - -2.0 1,214,026 + +1.2 1,214,229 + HP15_1181 0.36 +0.6 1,214,570 - +1.4
Or see this region's nucleotide sequence