Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_968 and HP15_969 are separated by 591 nucleotides HP15_969 and HP15_970 overlap by 75 nucleotides HP15_970 and HP15_971 are separated by 64 nucleotides HP15_971 and HP15_972 are separated by 191 nucleotides
HP15_968: HP15_968 - hypothetical protein, at 981,301 to 981,921
_968
HP15_969: HP15_969 - hypothetical protein, at 982,513 to 983,028
_969
HP15_970: HP15_970 - hypothetical protein, at 982,954 to 983,067
_970
HP15_971: HP15_971 - NIPSNAP family containing protein, at 983,132 to 983,437
_971
HP15_972: HP15_972 - hypothetical protein, at 983,629 to 984,114
_972
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 981.528 kb on + strand, within HP15_968 at 981.640 kb on + strand, within HP15_968 at 981.811 kb on + strand, within HP15_968 at 981.853 kb on - strand, within HP15_968 at 981.873 kb on + strand at 981.950 kb on - strand at 981.952 kb on + strand at 981.963 kb on - strand at 981.965 kb on + strand at 981.973 kb on - strand at 981.973 kb on - strand at 981.973 kb on - strand at 982.135 kb on - strand at 982.164 kb on + strand at 982.172 kb on - strand at 982.238 kb on - strand at 982.267 kb on + strand at 982.399 kb on - strand at 982.423 kb on + strand at 982.423 kb on + strand at 982.426 kb on - strand at 982.431 kb on + strand at 982.466 kb on + strand at 982.466 kb on + strand at 982.497 kb on + strand at 982.538 kb on - strand at 982.608 kb on + strand, within HP15_969 at 982.739 kb on - strand, within HP15_969 at 982.761 kb on + strand, within HP15_969 at 982.815 kb on + strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.830 kb on + strand, within HP15_969 at 982.915 kb on + strand, within HP15_969 at 982.915 kb on + strand, within HP15_969 at 982.923 kb on - strand, within HP15_969 at 982.923 kb on - strand, within HP15_969 at 982.923 kb on - strand, within HP15_969 at 982.937 kb on - strand, within HP15_969 at 982.937 kb on - strand, within HP15_969 at 983.033 kb on + strand, within HP15_970 at 983.035 kb on + strand, within HP15_970 at 983.048 kb on - strand, within HP15_970 at 983.134 kb on - strand at 983.165 kb on - strand, within HP15_971 at 983.175 kb on - strand, within HP15_971 at 983.200 kb on + strand, within HP15_971 at 983.208 kb on - strand, within HP15_971 at 983.223 kb on - strand, within HP15_971 at 983.224 kb on - strand, within HP15_971 at 983.326 kb on - strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.400 kb on + strand, within HP15_971 at 983.403 kb on - strand, within HP15_971 at 983.472 kb on - strand at 983.491 kb on + strand at 983.504 kb on + strand at 983.530 kb on - strand at 983.657 kb on - strand at 983.709 kb on - strand, within HP15_972 at 983.721 kb on - strand, within HP15_972 at 983.871 kb on + strand, within HP15_972
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 981,528 + HP15_968 0.37 +0.1 981,640 + HP15_968 0.55 +1.0 981,811 + HP15_968 0.82 -0.6 981,853 - HP15_968 0.89 +1.3 981,873 + +0.4 981,950 - +0.9 981,952 + +0.2 981,963 - +0.2 981,965 + +0.1 981,973 - -0.0 981,973 - -0.7 981,973 - -0.1 982,135 - -0.1 982,164 + +0.2 982,172 - +0.6 982,238 - -0.0 982,267 + -0.7 982,399 - +0.5 982,423 + +0.3 982,423 + -0.3 982,426 - -0.3 982,431 + -0.4 982,466 + -0.5 982,466 + +1.1 982,497 + +0.1 982,538 - +0.3 982,608 + HP15_969 0.18 -1.1 982,739 - HP15_969 0.44 -0.1 982,761 + HP15_969 0.48 -0.2 982,815 + HP15_969 0.59 -0.3 982,823 - HP15_969 0.60 -2.0 982,823 - HP15_969 0.60 -2.2 982,823 - HP15_969 0.60 +0.1 982,823 - HP15_969 0.60 -1.1 982,830 + HP15_969 0.61 +0.8 982,915 + HP15_969 0.78 -2.5 982,915 + HP15_969 0.78 +0.8 982,923 - HP15_969 0.79 -1.1 982,923 - HP15_969 0.79 -1.1 982,923 - HP15_969 0.79 +0.1 982,937 - HP15_969 0.82 +0.1 982,937 - HP15_969 0.82 -0.1 983,033 + HP15_970 0.69 -0.4 983,035 + HP15_970 0.71 +1.0 983,048 - HP15_970 0.82 -3.5 983,134 - -1.1 983,165 - HP15_971 0.11 +1.1 983,175 - HP15_971 0.14 +0.4 983,200 + HP15_971 0.22 +0.1 983,208 - HP15_971 0.25 -0.6 983,223 - HP15_971 0.30 +0.5 983,224 - HP15_971 0.30 -1.0 983,326 - HP15_971 0.63 +0.7 983,393 + HP15_971 0.85 -0.7 983,393 + HP15_971 0.85 -0.5 983,393 + HP15_971 0.85 +0.0 983,393 + HP15_971 0.85 -0.6 983,400 + HP15_971 0.88 +0.5 983,403 - HP15_971 0.89 +0.2 983,472 - +2.4 983,491 + +1.2 983,504 + +0.2 983,530 - -0.9 983,657 - +0.3 983,709 - HP15_972 0.16 -0.4 983,721 - HP15_972 0.19 +0.9 983,871 + HP15_972 0.50 +1.1
Or see this region's nucleotide sequence