Strain Fitness in Marinobacter adhaerens HP15 around HP15_950

Experiment: monoculture; Experiment A, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_948 and HP15_949 are separated by 120 nucleotidesHP15_949 and HP15_950 overlap by 4 nucleotidesHP15_950 and HP15_951 are separated by 107 nucleotides HP15_948: HP15_948 - conserved hypothetical protein, secreted, at 964,950 to 965,378 _948 HP15_949: HP15_949 - conserved hypothetical protein, at 965,499 to 966,227 _949 HP15_950: HP15_950 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 966,224 to 966,832 _950 HP15_951: HP15_951 - transcriptional regulator, AraC family protein, at 966,940 to 967,950 _951 Position (kb) 966 967Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 965.282 kb on + strand, within HP15_948at 965.282 kb on - strand, within HP15_948at 965.314 kb on - strand, within HP15_948at 965.409 kb on - strandat 965.518 kb on + strandat 965.526 kb on - strandat 965.545 kb on + strandat 965.553 kb on - strandat 965.589 kb on + strand, within HP15_949at 965.605 kb on + strand, within HP15_949at 965.613 kb on - strand, within HP15_949at 965.615 kb on + strand, within HP15_949at 965.623 kb on - strand, within HP15_949at 965.623 kb on - strand, within HP15_949at 965.857 kb on + strand, within HP15_949at 965.865 kb on - strand, within HP15_949at 965.966 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.017 kb on - strand, within HP15_949at 966.051 kb on - strand, within HP15_949at 966.056 kb on - strand, within HP15_949at 966.239 kb on + strandat 966.250 kb on + strandat 966.250 kb on + strandat 966.250 kb on + strandat 966.250 kb on + strandat 966.250 kb on + strandat 966.258 kb on - strandat 966.258 kb on - strandat 966.427 kb on + strand, within HP15_950at 966.580 kb on + strand, within HP15_950at 966.643 kb on - strand, within HP15_950at 966.754 kb on + strand, within HP15_950at 966.772 kb on - strandat 966.772 kb on - strandat 966.819 kb on + strandat 966.917 kb on - strandat 966.917 kb on - strandat 966.917 kb on - strandat 966.917 kb on - strandat 966.942 kb on + strandat 967.106 kb on + strand, within HP15_951at 967.134 kb on - strand, within HP15_951at 967.135 kb on - strand, within HP15_951at 967.188 kb on - strand, within HP15_951at 967.212 kb on - strand, within HP15_951at 967.217 kb on - strand, within HP15_951at 967.294 kb on + strand, within HP15_951at 967.339 kb on - strand, within HP15_951at 967.348 kb on + strand, within HP15_951at 967.351 kb on - strand, within HP15_951at 967.397 kb on - strand, within HP15_951at 967.403 kb on + strand, within HP15_951at 967.456 kb on + strand, within HP15_951at 967.515 kb on - strand, within HP15_951at 967.519 kb on + strand, within HP15_951at 967.519 kb on + strand, within HP15_951at 967.520 kb on - strand, within HP15_951at 967.520 kb on - strand, within HP15_951at 967.527 kb on - strand, within HP15_951at 967.545 kb on + strand, within HP15_951at 967.669 kb on - strand, within HP15_951at 967.685 kb on - strand, within HP15_951at 967.782 kb on - strand, within HP15_951at 967.819 kb on + strand, within HP15_951

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4
remove
965,282 + HP15_948 0.77 -0.8
965,282 - HP15_948 0.77 -0.4
965,314 - HP15_948 0.85 +0.9
965,409 - -1.3
965,518 + -0.3
965,526 - +1.6
965,545 + +0.6
965,553 - +0.6
965,589 + HP15_949 0.12 +0.3
965,605 + HP15_949 0.15 +0.4
965,613 - HP15_949 0.16 -0.0
965,615 + HP15_949 0.16 -0.9
965,623 - HP15_949 0.17 -0.4
965,623 - HP15_949 0.17 -0.3
965,857 + HP15_949 0.49 +0.5
965,865 - HP15_949 0.50 +1.4
965,966 + HP15_949 0.64 +1.2
966,009 + HP15_949 0.70 +0.8
966,009 + HP15_949 0.70 -0.5
966,009 + HP15_949 0.70 -0.8
966,009 + HP15_949 0.70 +0.9
966,009 + HP15_949 0.70 -0.9
966,009 + HP15_949 0.70 +0.6
966,009 + HP15_949 0.70 -0.2
966,009 + HP15_949 0.70 -0.6
966,009 + HP15_949 0.70 -0.1
966,009 + HP15_949 0.70 -0.7
966,017 - HP15_949 0.71 -0.1
966,051 - HP15_949 0.76 -0.8
966,056 - HP15_949 0.76 -2.3
966,239 + -1.1
966,250 + -1.1
966,250 + -1.1
966,250 + -0.3
966,250 + -1.2
966,250 + +0.0
966,258 - -1.9
966,258 - -0.5
966,427 + HP15_950 0.33 -0.1
966,580 + HP15_950 0.58 +0.7
966,643 - HP15_950 0.69 +0.8
966,754 + HP15_950 0.87 -0.4
966,772 - -0.6
966,772 - +0.9
966,819 + -0.6
966,917 - +0.8
966,917 - +0.3
966,917 - +0.7
966,917 - +1.1
966,942 + -1.8
967,106 + HP15_951 0.16 -4.1
967,134 - HP15_951 0.19 -2.2
967,135 - HP15_951 0.19 +0.3
967,188 - HP15_951 0.25 -0.3
967,212 - HP15_951 0.27 -0.5
967,217 - HP15_951 0.27 -0.1
967,294 + HP15_951 0.35 -1.4
967,339 - HP15_951 0.39 +0.6
967,348 + HP15_951 0.40 +0.7
967,351 - HP15_951 0.41 -1.4
967,397 - HP15_951 0.45 +0.5
967,403 + HP15_951 0.46 +0.3
967,456 + HP15_951 0.51 +3.4
967,515 - HP15_951 0.57 -0.4
967,519 + HP15_951 0.57 -2.8
967,519 + HP15_951 0.57 -0.1
967,520 - HP15_951 0.57 +0.8
967,520 - HP15_951 0.57 +0.6
967,527 - HP15_951 0.58 +0.3
967,545 + HP15_951 0.60 +0.3
967,669 - HP15_951 0.72 -0.2
967,685 - HP15_951 0.74 +0.0
967,782 - HP15_951 0.83 -0.5
967,819 + HP15_951 0.87 +0.6

Or see this region's nucleotide sequence