Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_640 and HP15_641 are separated by 129 nucleotides HP15_641 and HP15_642 are separated by 1 nucleotides HP15_642 and HP15_643 are separated by 80 nucleotides
HP15_640: HP15_640 - lipoic acid synthetase, at 663,858 to 664,910
_640
HP15_641: HP15_641 - homocysteine synthase, at 665,040 to 666,317
_641
HP15_642: HP15_642 - membrane protein, at 666,319 to 666,579
_642
HP15_643: HP15_643 - transmembrane pair domain protein, at 666,660 to 667,094
_643
Position (kb) 665
666
667 Strain fitness (log2 ratio) -2
-1
0
1
2 at 665.050 kb on + strand at 665.051 kb on - strand at 665.123 kb on + strand at 665.143 kb on - strand at 665.251 kb on + strand, within HP15_641 at 665.309 kb on - strand, within HP15_641 at 665.453 kb on + strand, within HP15_641 at 665.491 kb on - strand, within HP15_641 at 665.496 kb on - strand, within HP15_641 at 665.523 kb on - strand, within HP15_641 at 665.531 kb on - strand, within HP15_641 at 665.561 kb on + strand, within HP15_641 at 665.561 kb on + strand, within HP15_641 at 665.562 kb on + strand, within HP15_641 at 665.570 kb on + strand, within HP15_641 at 665.570 kb on + strand, within HP15_641 at 665.583 kb on - strand, within HP15_641 at 665.583 kb on - strand, within HP15_641 at 665.608 kb on - strand, within HP15_641 at 665.625 kb on + strand, within HP15_641 at 665.763 kb on - strand, within HP15_641 at 665.889 kb on + strand, within HP15_641 at 665.946 kb on - strand, within HP15_641 at 665.981 kb on + strand, within HP15_641 at 666.032 kb on + strand, within HP15_641 at 666.065 kb on - strand, within HP15_641 at 666.111 kb on - strand, within HP15_641 at 666.171 kb on + strand, within HP15_641 at 666.179 kb on - strand, within HP15_641 at 666.222 kb on + strand at 666.223 kb on + strand at 666.223 kb on - strand at 666.266 kb on - strand at 666.296 kb on + strand at 666.296 kb on + strand at 666.304 kb on - strand at 666.361 kb on - strand, within HP15_642 at 666.385 kb on - strand, within HP15_642 at 666.522 kb on + strand, within HP15_642 at 666.739 kb on + strand, within HP15_643 at 666.914 kb on + strand, within HP15_643 at 666.947 kb on - strand, within HP15_643 at 666.968 kb on - strand, within HP15_643 at 667.008 kb on + strand, within HP15_643 at 667.034 kb on + strand, within HP15_643 at 667.057 kb on - strand at 667.143 kb on + strand at 667.143 kb on + strand at 667.151 kb on - strand at 667.151 kb on - strand at 667.220 kb on + strand at 667.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 665,050 + +0.4 665,051 - +0.3 665,123 + -0.3 665,143 - -0.2 665,251 + HP15_641 0.17 +1.7 665,309 - HP15_641 0.21 +0.1 665,453 + HP15_641 0.32 +0.6 665,491 - HP15_641 0.35 +0.7 665,496 - HP15_641 0.36 +0.6 665,523 - HP15_641 0.38 -0.3 665,531 - HP15_641 0.38 -0.7 665,561 + HP15_641 0.41 +0.5 665,561 + HP15_641 0.41 -0.3 665,562 + HP15_641 0.41 +1.9 665,570 + HP15_641 0.41 +0.4 665,570 + HP15_641 0.41 +1.1 665,583 - HP15_641 0.42 -0.7 665,583 - HP15_641 0.42 +0.3 665,608 - HP15_641 0.44 +1.0 665,625 + HP15_641 0.46 -0.6 665,763 - HP15_641 0.57 +0.7 665,889 + HP15_641 0.66 +2.6 665,946 - HP15_641 0.71 -0.4 665,981 + HP15_641 0.74 +0.1 666,032 + HP15_641 0.78 +0.3 666,065 - HP15_641 0.80 +0.8 666,111 - HP15_641 0.84 -0.3 666,171 + HP15_641 0.88 +1.4 666,179 - HP15_641 0.89 +0.9 666,222 + -1.5 666,223 + -0.0 666,223 - -1.9 666,266 - +0.8 666,296 + -1.0 666,296 + -0.4 666,304 - -0.4 666,361 - HP15_642 0.16 -0.1 666,385 - HP15_642 0.25 +0.6 666,522 + HP15_642 0.78 +2.5 666,739 + HP15_643 0.18 +1.8 666,914 + HP15_643 0.58 +1.0 666,947 - HP15_643 0.66 -0.9 666,968 - HP15_643 0.71 +0.3 667,008 + HP15_643 0.80 -0.1 667,034 + HP15_643 0.86 +1.4 667,057 - +0.1 667,143 + +0.2 667,143 + -0.6 667,151 - -0.5 667,151 - -1.5 667,220 + -1.7 667,259 - +1.3
Or see this region's nucleotide sequence