Experiment: monoculture; Experiment A, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_56 and HP15_57 are separated by 32 nucleotides HP15_57 and HP15_58 are separated by 45 nucleotides HP15_58 and HP15_59 are separated by 91 nucleotides
HP15_56: HP15_56 - acyl-CoA dehydrogenase domain protein, at 61,337 to 62,461
_56
HP15_57: HP15_57 - conserved hypothetical protein, at 62,494 to 63,393
_57
HP15_58: HP15_58 - GTP cyclohydrolase 1, at 63,439 to 64,068
_58
HP15_59: HP15_59 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 64,160 to 64,906
_59
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 61.499 kb on - strand, within HP15_56 at 61.502 kb on - strand, within HP15_56 at 61.550 kb on - strand, within HP15_56 at 61.561 kb on + strand, within HP15_56 at 61.733 kb on - strand, within HP15_56 at 61.751 kb on + strand, within HP15_56 at 61.759 kb on - strand, within HP15_56 at 61.852 kb on - strand, within HP15_56 at 61.943 kb on + strand, within HP15_56 at 61.943 kb on + strand, within HP15_56 at 61.951 kb on - strand, within HP15_56 at 61.956 kb on - strand, within HP15_56 at 61.956 kb on - strand, within HP15_56 at 61.988 kb on + strand, within HP15_56 at 61.988 kb on + strand, within HP15_56 at 61.998 kb on + strand, within HP15_56 at 62.026 kb on - strand, within HP15_56 at 62.218 kb on - strand, within HP15_56 at 62.243 kb on + strand, within HP15_56 at 62.250 kb on + strand, within HP15_56 at 62.266 kb on + strand, within HP15_56 at 62.287 kb on + strand, within HP15_56 at 62.303 kb on - strand, within HP15_56 at 62.346 kb on - strand, within HP15_56 at 62.415 kb on - strand at 62.481 kb on + strand at 62.487 kb on - strand at 62.516 kb on - strand at 62.536 kb on - strand at 62.577 kb on - strand at 62.590 kb on - strand, within HP15_57 at 62.649 kb on - strand, within HP15_57 at 62.654 kb on - strand, within HP15_57 at 62.656 kb on + strand, within HP15_57 at 62.666 kb on + strand, within HP15_57 at 62.682 kb on + strand, within HP15_57 at 62.786 kb on + strand, within HP15_57 at 62.799 kb on - strand, within HP15_57 at 62.837 kb on + strand, within HP15_57 at 62.837 kb on + strand, within HP15_57 at 62.873 kb on - strand, within HP15_57 at 62.888 kb on - strand, within HP15_57 at 62.920 kb on - strand, within HP15_57 at 63.140 kb on + strand, within HP15_57 at 63.201 kb on + strand, within HP15_57 at 63.313 kb on - strand at 63.343 kb on - strand at 63.461 kb on - strand at 63.479 kb on + strand at 63.505 kb on + strand, within HP15_58 at 63.569 kb on - strand, within HP15_58 at 63.585 kb on + strand, within HP15_58 at 63.593 kb on - strand, within HP15_58 at 63.595 kb on + strand, within HP15_58 at 63.601 kb on - strand, within HP15_58 at 63.775 kb on + strand, within HP15_58 at 63.854 kb on - strand, within HP15_58 at 63.870 kb on - strand, within HP15_58 at 63.870 kb on - strand, within HP15_58 at 63.870 kb on - strand, within HP15_58 at 63.896 kb on + strand, within HP15_58 at 63.896 kb on + strand, within HP15_58 at 63.904 kb on - strand, within HP15_58 at 63.914 kb on + strand, within HP15_58 at 63.914 kb on - strand, within HP15_58 at 63.933 kb on + strand, within HP15_58 at 63.936 kb on - strand, within HP15_58 at 63.985 kb on + strand, within HP15_58 at 63.992 kb on + strand, within HP15_58 at 63.993 kb on - strand, within HP15_58 at 63.997 kb on + strand, within HP15_58 at 64.000 kb on - strand, within HP15_58 at 64.000 kb on - strand, within HP15_58 at 64.005 kb on - strand, within HP15_58 at 64.031 kb on - strand at 64.063 kb on + strand at 64.066 kb on - strand at 64.066 kb on - strand at 64.067 kb on + strand at 64.071 kb on - strand at 64.139 kb on + strand at 64.141 kb on + strand at 64.141 kb on + strand at 64.142 kb on - strand at 64.149 kb on - strand at 64.196 kb on + strand at 64.229 kb on - strand at 64.229 kb on - strand at 64.274 kb on + strand, within HP15_59 at 64.282 kb on - strand, within HP15_59 at 64.282 kb on - strand, within HP15_59 at 64.282 kb on - strand, within HP15_59 at 64.307 kb on + strand, within HP15_59 at 64.310 kb on - strand, within HP15_59 at 64.351 kb on - strand, within HP15_59
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4 remove 61,499 - HP15_56 0.14 -0.2 61,502 - HP15_56 0.15 +1.5 61,550 - HP15_56 0.19 -1.2 61,561 + HP15_56 0.20 +0.2 61,733 - HP15_56 0.35 +0.3 61,751 + HP15_56 0.37 +1.5 61,759 - HP15_56 0.38 +0.1 61,852 - HP15_56 0.46 -1.4 61,943 + HP15_56 0.54 +0.2 61,943 + HP15_56 0.54 +0.6 61,951 - HP15_56 0.55 +0.2 61,956 - HP15_56 0.55 -0.2 61,956 - HP15_56 0.55 +0.6 61,988 + HP15_56 0.58 +0.0 61,988 + HP15_56 0.58 +1.7 61,998 + HP15_56 0.59 +1.6 62,026 - HP15_56 0.61 -2.1 62,218 - HP15_56 0.78 -0.2 62,243 + HP15_56 0.81 +1.4 62,250 + HP15_56 0.81 +1.5 62,266 + HP15_56 0.83 +0.1 62,287 + HP15_56 0.84 +0.7 62,303 - HP15_56 0.86 +0.3 62,346 - HP15_56 0.90 +0.8 62,415 - -0.3 62,481 + +0.6 62,487 - -0.6 62,516 - +0.9 62,536 - +0.8 62,577 - -0.1 62,590 - HP15_57 0.11 +0.2 62,649 - HP15_57 0.17 +2.5 62,654 - HP15_57 0.18 -0.2 62,656 + HP15_57 0.18 +0.8 62,666 + HP15_57 0.19 +0.2 62,682 + HP15_57 0.21 +0.7 62,786 + HP15_57 0.32 +0.3 62,799 - HP15_57 0.34 -1.3 62,837 + HP15_57 0.38 -0.5 62,837 + HP15_57 0.38 +1.6 62,873 - HP15_57 0.42 +1.3 62,888 - HP15_57 0.44 +0.7 62,920 - HP15_57 0.47 +1.2 63,140 + HP15_57 0.72 +2.0 63,201 + HP15_57 0.79 +0.9 63,313 - +1.1 63,343 - -0.8 63,461 - +1.0 63,479 + +0.7 63,505 + HP15_58 0.10 -2.9 63,569 - HP15_58 0.21 +0.8 63,585 + HP15_58 0.23 -0.9 63,593 - HP15_58 0.24 -0.3 63,595 + HP15_58 0.25 +1.2 63,601 - HP15_58 0.26 -0.3 63,775 + HP15_58 0.53 -0.9 63,854 - HP15_58 0.66 +2.1 63,870 - HP15_58 0.68 +1.0 63,870 - HP15_58 0.68 -0.0 63,870 - HP15_58 0.68 -0.7 63,896 + HP15_58 0.73 -1.9 63,896 + HP15_58 0.73 -1.1 63,904 - HP15_58 0.74 -0.5 63,914 + HP15_58 0.75 +0.6 63,914 - HP15_58 0.75 +0.1 63,933 + HP15_58 0.78 -1.3 63,936 - HP15_58 0.79 -0.5 63,985 + HP15_58 0.87 -0.4 63,992 + HP15_58 0.88 +0.3 63,993 - HP15_58 0.88 -0.5 63,997 + HP15_58 0.89 -0.5 64,000 - HP15_58 0.89 +0.1 64,000 - HP15_58 0.89 +1.5 64,005 - HP15_58 0.90 +0.2 64,031 - -0.7 64,063 + -0.6 64,066 - -0.1 64,066 - +0.8 64,067 + +0.2 64,071 - -0.5 64,139 + +0.3 64,141 + -0.0 64,141 + -0.1 64,142 - +0.3 64,149 - -0.1 64,196 + +0.8 64,229 - -0.4 64,229 - +0.3 64,274 + HP15_59 0.15 +1.4 64,282 - HP15_59 0.16 +0.9 64,282 - HP15_59 0.16 +0.5 64,282 - HP15_59 0.16 -1.4 64,307 + HP15_59 0.20 +0.6 64,310 - HP15_59 0.20 +1.1 64,351 - HP15_59 0.26 -0.4
Or see this region's nucleotide sequence