Strain Fitness in Marinobacter adhaerens HP15 around HP15_53

Experiment: monoculture; Experiment A, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_52 and HP15_53 are separated by 109 nucleotidesHP15_53 and HP15_54 overlap by 1 nucleotides HP15_52: HP15_52 - amidohydrolase 2, at 56,875 to 58,182 _52 HP15_53: HP15_53 - acyl-CoA dehydrogenase domain protein, at 58,292 to 59,443 _53 HP15_54: HP15_54 - acyl-CoA dehydrogenase domain protein, at 59,443 to 60,501 _54 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1 2 3at 57.299 kb on - strand, within HP15_52at 57.351 kb on - strand, within HP15_52at 57.383 kb on + strand, within HP15_52at 57.476 kb on + strand, within HP15_52at 57.486 kb on + strand, within HP15_52at 57.539 kb on + strand, within HP15_52at 57.547 kb on - strand, within HP15_52at 57.575 kb on - strand, within HP15_52at 57.668 kb on + strand, within HP15_52at 57.671 kb on + strand, within HP15_52at 57.697 kb on - strand, within HP15_52at 57.730 kb on + strand, within HP15_52at 57.732 kb on - strand, within HP15_52at 57.738 kb on - strand, within HP15_52at 57.738 kb on - strand, within HP15_52at 57.866 kb on - strand, within HP15_52at 57.913 kb on + strand, within HP15_52at 57.922 kb on - strand, within HP15_52at 57.924 kb on + strand, within HP15_52at 57.932 kb on - strand, within HP15_52at 57.932 kb on - strand, within HP15_52at 57.932 kb on - strand, within HP15_52at 57.932 kb on - strand, within HP15_52at 57.948 kb on + strand, within HP15_52at 57.966 kb on + strand, within HP15_52at 57.966 kb on + strand, within HP15_52at 57.966 kb on + strand, within HP15_52at 57.966 kb on + strand, within HP15_52at 57.966 kb on + strand, within HP15_52at 57.989 kb on + strand, within HP15_52at 57.995 kb on - strand, within HP15_52at 57.997 kb on - strand, within HP15_52at 58.037 kb on - strand, within HP15_52at 58.056 kb on - strandat 58.067 kb on - strandat 58.091 kb on + strandat 58.199 kb on + strandat 58.199 kb on - strandat 58.225 kb on - strandat 58.236 kb on + strandat 58.317 kb on + strandat 58.333 kb on - strandat 58.350 kb on - strandat 58.385 kb on - strandat 58.412 kb on - strand, within HP15_53at 58.468 kb on + strand, within HP15_53at 58.474 kb on + strand, within HP15_53at 58.497 kb on - strand, within HP15_53at 58.548 kb on - strand, within HP15_53at 58.576 kb on - strand, within HP15_53at 58.685 kb on - strand, within HP15_53at 58.717 kb on - strand, within HP15_53at 58.745 kb on + strand, within HP15_53at 58.793 kb on + strand, within HP15_53at 58.804 kb on + strand, within HP15_53at 58.819 kb on + strand, within HP15_53at 58.819 kb on + strand, within HP15_53at 58.819 kb on + strand, within HP15_53at 58.932 kb on - strand, within HP15_53at 58.932 kb on - strand, within HP15_53at 58.932 kb on - strand, within HP15_53at 59.001 kb on + strand, within HP15_53at 59.022 kb on - strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.080 kb on + strand, within HP15_53at 59.088 kb on - strand, within HP15_53at 59.158 kb on + strand, within HP15_53at 59.166 kb on - strand, within HP15_53at 59.241 kb on + strand, within HP15_53at 59.259 kb on - strand, within HP15_53at 59.322 kb on - strand, within HP15_53at 59.322 kb on - strand, within HP15_53at 59.324 kb on + strand, within HP15_53at 59.326 kb on - strand, within HP15_53at 59.334 kb on + strandat 59.334 kb on + strandat 59.342 kb on - strandat 59.342 kb on - strandat 59.379 kb on - strandat 59.495 kb on - strandat 59.498 kb on - strandat 59.513 kb on + strandat 59.513 kb on - strandat 59.521 kb on - strandat 59.521 kb on - strandat 59.570 kb on - strand, within HP15_54at 59.580 kb on - strand, within HP15_54at 59.622 kb on - strand, within HP15_54at 59.732 kb on - strand, within HP15_54at 59.794 kb on + strand, within HP15_54at 59.851 kb on - strand, within HP15_54at 59.880 kb on - strand, within HP15_54at 59.880 kb on - strand, within HP15_54at 59.885 kb on + strand, within HP15_54at 59.885 kb on + strand, within HP15_54at 59.894 kb on + strand, within HP15_54at 59.902 kb on - strand, within HP15_54at 60.035 kb on + strand, within HP15_54at 60.068 kb on - strand, within HP15_54at 60.137 kb on - strand, within HP15_54at 60.147 kb on - strand, within HP15_54at 60.174 kb on - strand, within HP15_54at 60.183 kb on - strand, within HP15_54at 60.228 kb on - strand, within HP15_54at 60.228 kb on - strand, within HP15_54at 60.270 kb on - strand, within HP15_54at 60.328 kb on - strand, within HP15_54at 60.330 kb on + strand, within HP15_54at 60.332 kb on + strand, within HP15_54at 60.337 kb on + strand, within HP15_54at 60.338 kb on - strand, within HP15_54at 60.338 kb on - strand, within HP15_54at 60.369 kb on + strand, within HP15_54at 60.397 kb on - strandat 60.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 4
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57,299 - HP15_52 0.32 +1.3
57,351 - HP15_52 0.36 -0.8
57,383 + HP15_52 0.39 +0.1
57,476 + HP15_52 0.46 -0.3
57,486 + HP15_52 0.47 +2.1
57,539 + HP15_52 0.51 -1.5
57,547 - HP15_52 0.51 -0.2
57,575 - HP15_52 0.54 -0.2
57,668 + HP15_52 0.61 +0.6
57,671 + HP15_52 0.61 +0.1
57,697 - HP15_52 0.63 -0.3
57,730 + HP15_52 0.65 -0.6
57,732 - HP15_52 0.66 +1.2
57,738 - HP15_52 0.66 +0.2
57,738 - HP15_52 0.66 -0.6
57,866 - HP15_52 0.76 -0.9
57,913 + HP15_52 0.79 +0.0
57,922 - HP15_52 0.80 -0.5
57,924 + HP15_52 0.80 +0.5
57,932 - HP15_52 0.81 -0.0
57,932 - HP15_52 0.81 -0.1
57,932 - HP15_52 0.81 +0.4
57,932 - HP15_52 0.81 -0.7
57,948 + HP15_52 0.82 -0.0
57,966 + HP15_52 0.83 +0.0
57,966 + HP15_52 0.83 +1.9
57,966 + HP15_52 0.83 -2.0
57,966 + HP15_52 0.83 +0.6
57,966 + HP15_52 0.83 -0.5
57,989 + HP15_52 0.85 -0.4
57,995 - HP15_52 0.86 -0.4
57,997 - HP15_52 0.86 +0.5
58,037 - HP15_52 0.89 +0.8
58,056 - +0.9
58,067 - +1.1
58,091 + +1.6
58,199 + +1.0
58,199 - +0.1
58,225 - -0.1
58,236 + +1.0
58,317 + +0.3
58,333 - -0.2
58,350 - +0.7
58,385 - +0.5
58,412 - HP15_53 0.10 +1.5
58,468 + HP15_53 0.15 +0.2
58,474 + HP15_53 0.16 +1.7
58,497 - HP15_53 0.18 +0.2
58,548 - HP15_53 0.22 -0.2
58,576 - HP15_53 0.25 -1.2
58,685 - HP15_53 0.34 +1.0
58,717 - HP15_53 0.37 +0.7
58,745 + HP15_53 0.39 -0.1
58,793 + HP15_53 0.43 +0.4
58,804 + HP15_53 0.44 +2.8
58,819 + HP15_53 0.46 +1.4
58,819 + HP15_53 0.46 +1.1
58,819 + HP15_53 0.46 +0.6
58,932 - HP15_53 0.56 +0.0
58,932 - HP15_53 0.56 -0.1
58,932 - HP15_53 0.56 +0.1
59,001 + HP15_53 0.62 +0.6
59,022 - HP15_53 0.63 -0.1
59,080 + HP15_53 0.68 +0.2
59,080 + HP15_53 0.68 +0.6
59,080 + HP15_53 0.68 +0.1
59,080 + HP15_53 0.68 +0.4
59,080 + HP15_53 0.68 +0.7
59,088 - HP15_53 0.69 -0.1
59,158 + HP15_53 0.75 +1.5
59,166 - HP15_53 0.76 -0.4
59,241 + HP15_53 0.82 +1.2
59,259 - HP15_53 0.84 -1.1
59,322 - HP15_53 0.89 -1.0
59,322 - HP15_53 0.89 -0.1
59,324 + HP15_53 0.90 +2.0
59,326 - HP15_53 0.90 +0.0
59,334 + +0.8
59,334 + -0.1
59,342 - +0.3
59,342 - -1.0
59,379 - +0.7
59,495 - -0.3
59,498 - +0.1
59,513 + -1.4
59,513 - +0.1
59,521 - +0.6
59,521 - +0.0
59,570 - HP15_54 0.12 -2.6
59,580 - HP15_54 0.13 +1.3
59,622 - HP15_54 0.17 -0.6
59,732 - HP15_54 0.27 +0.3
59,794 + HP15_54 0.33 +1.2
59,851 - HP15_54 0.39 -0.8
59,880 - HP15_54 0.41 +1.2
59,880 - HP15_54 0.41 +0.1
59,885 + HP15_54 0.42 +0.2
59,885 + HP15_54 0.42 +0.4
59,894 + HP15_54 0.43 -0.5
59,902 - HP15_54 0.43 -0.1
60,035 + HP15_54 0.56 +1.4
60,068 - HP15_54 0.59 -0.5
60,137 - HP15_54 0.66 +1.4
60,147 - HP15_54 0.66 +2.0
60,174 - HP15_54 0.69 -0.1
60,183 - HP15_54 0.70 +0.5
60,228 - HP15_54 0.74 +0.5
60,228 - HP15_54 0.74 -0.1
60,270 - HP15_54 0.78 +0.1
60,328 - HP15_54 0.84 +1.1
60,330 + HP15_54 0.84 -0.0
60,332 + HP15_54 0.84 +2.1
60,337 + HP15_54 0.84 +0.8
60,338 - HP15_54 0.85 +0.8
60,338 - HP15_54 0.85 +1.0
60,369 + HP15_54 0.87 +1.2
60,397 - +2.3
60,439 - +0.5

Or see this region's nucleotide sequence